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Ulcerative Colitis Phase 3 Binary Endpoint NCT04738942

A Study of Intravenous Vedolizumab Administered Every 4 Weeks in Japanese Participants With Moderate to Severe Ulcerative Colitis or Crohn's Disease: Complete Statistical Analysis

The registry record describes an open-label, nonrandomized study of intravenous vedolizumab every four weeks in Japanese participants with ulcerative colitis or Crohn's disease who experienced secondary loss of response during every-eight-week maintenance treatment. The primary endpoint is clinical response in the ulcerative colitis cohort at Week 12, but its result is not reported in the registry record.

Trial start: 2021-06-04  ·  Enrollment: 56  ·  Sponsor: Takeda
Scope of this record

This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record. Numerical trial results on this page are restricted to the results posted in the ClinicalTrials.gov record; calculations added by Clinical Biostats are labelled as such.

1. Trial at a Glance

This page covers the registry results for A Study of Intravenous Vedolizumab Administered Every 4 Weeks in Japanese Participants With Moderate to Severe Ulcerative Colitis or Crohn's Disease (NCT04738942), a non-randomized phase 3 study. The primary outcome is UC Cohort: Percentage of Participants With Clinical Response at Week 12 Based on Modified Mayo Score.

56
Enrollment
Phase 3
n/a
Arms
In the primary outcome
n/a
Effect
No re-analysis shown
n/a
95% CI
See limitations
FeatureRegistry value
ClinicalTrials.gov identifierNCT04738942
PhasePhase 3
ConditionUlcerative Colitis, Crohn's Disease
AllocationNon-Randomized
Design modelParallel
MaskingNone (open label)
Enrollment56
Arms in the primary outcomen/a
Lead sponsorTakeda
Results postedYes

2. Clinical Question

Population

Japanese participants with moderate to severe ulcerative colitis (UC) or Crohn's disease (CD) who experienced secondary loss of response while receiving vedolizumab IV every eight weeks. The primary endpoint concerns the UC cohort. The primary analysis population is described as participants who received at least one dose of study drug.

Intervention

Vedolizumab 300 mg by intravenous infusion every four weeks. The treatment phase lasts up to 12 weeks. Participants whose symptoms improve after that period may continue treatment in an extension phase, according to the registry description.

Comparator

No separate control treatment or comparator group is described. The UC and CD cohorts are disease groups receiving the study intervention, not randomized treatment arms for a like-for-like comparison.

Primary question

Among participants in the UC cohort, what percentage has a clinical response at Week 12, as defined using the modified Mayo score? The registry record does not report the resulting percentage or its confidence interval.

3. Trial Design

This is an open-label, Phase 3, nonrandomized, parallel study of intravenous vedolizumab administered every four weeks. It includes Japanese participants with moderate to severe UC or CD who experienced secondary loss of response during maintenance treatment with vedolizumab every eight weeks. The registry lists Takeda as the sponsor and the study location as Japan.

The intervention is vedolizumab 300 mg by IV infusion. The treatment phase is described as lasting up to 12 weeks, with assessment of symptom improvement after three infusions. Participants whose symptoms improve may continue every-four-week treatment in an extension phase until marketing approval of IV vedolizumab every four weeks or study termination. Participants without improvement stop treatment and have a final clinic visit 16 weeks after their last infusion. The description also states that participants have a phone follow-up six months after their last infusion to check for health problems.

The registry lists enrollment as 56. The study status is active, not recruiting. The listed start date is 2021-06-04, and the primary completion date is 2025-05-30. These record details do not establish that all study follow-up or analysis is complete.

Because allocation is nonrandomized and masking is absent, the study does not provide a randomized, blinded comparison of treatment strategies. The UC and CD cohorts are defined by disease, and both receive vedolizumab. Their outcomes should therefore be read as cohort-specific descriptions, not as evidence that one treatment is superior to another or that differences between the cohorts are caused by disease type. Details of the protocol's statistical plan are not reported in the registry record.

4. Participant Flow and Accounting

The registry reports how participants moved through each stage of the study. All counts below are exactly as posted; missing counts are not inferred from other stages.

Before assignment: A total of 56 participants with ulcerative colitis (UC) or Crohn's disease (CD) were enrolled in the study. The results in this summary are based on the study's primary completion date (30 May 2025). The study is ongoing in the open-label period, and additional results will be reported upon study completion.

Overall Study

StageUC Cohort: Vedolizumab 300 mgCD Cohort: Vedolizumab 300 mg
STARTED4115
COMPLETED00
NOT COMPLETED4115

Reasons for not completing this period:

ReasonUC Cohort: Vedolizumab 300 mgCD Cohort: Vedolizumab 300 mg
Ongoing in the Study4115

Analysis population for the primary outcome, as defined in the registry: The FAS included all participants who received at least 1 dose of study drug.

5. Baseline Characteristics

The table reproduces the baseline characteristics posted in the registry, which describe the participants analysed at baseline and help show whether the randomized groups were comparable.

Population: The full analysis set (FAS) included all participants who received at least 1 dose of study drug. UC cohort and CD cohort were analyzed separately. Numbers in the total column are simply data from the two cohorts combined and not part of the results produced within the study.

CharacteristicUnitUC Cohort: Vedolizumab 300 mgCD Cohort: Vedolizumab 300 mgTotal
Participants analysed411556
Age, Continuousyears49.5 (SD 16.93)41.5 (SD 12.84)47.4 (SD 16.22)
Sex: Female, Male: FemaleParticipants15722
Sex: Female, Male: MaleParticipants26834
Ethnicity (NIH/OMB): Hispanic or LatinoParticipants000
Ethnicity (NIH/OMB): Not Hispanic or LatinoParticipants411556
Ethnicity (NIH/OMB): Unknown or Not ReportedParticipants000
Race (NIH/OMB): American Indian or Alaska NativeParticipants000
Race (NIH/OMB): AsianParticipants411556
Race (NIH/OMB): Native Hawaiian or Other Pacific IslanderParticipants000
Race (NIH/OMB): Black or African AmericanParticipants000
Race (NIH/OMB): WhiteParticipants000
Race (NIH/OMB): More than one raceParticipants000
Race (NIH/OMB): Unknown or Not ReportedParticipants000

6. Primary Endpoint

The registry lists the primary outcome as UC Cohort: Percentage of Participants With Clinical Response at Week 12 Based on Modified Mayo Score, measured over At Week 12.

ElementRegistry entry
Result typeNumber
Measure of spread95% Confidence Interval
Unitpercentage of participants
Endpoint classificationBinary Endpoint

The primary endpoint is the percentage of participants in the UC cohort with clinical response at Week 12, based on the modified Mayo score. The registry defines response as a reduction of at least 2 points and at least 25 percent in that score, together with either a decrease of at least 1 point in the rectal bleeding sub-score or a rectal bleeding sub-score of no more than 1 from baseline at Week 0.

The modified Mayo score combines stool frequency, rectal bleeding, and the Mayo endoscopic sub-score. Each component is graded from 0 to 3, and the total ranges from 0 to 9; higher scores indicate more severe disease. The endpoint therefore summarizes change across several aspects of UC disease activity while requiring a specified improvement in rectal bleeding.

A percentage is useful for describing how common the defined response was among the analysis population. Its confidence interval would convey uncertainty around that estimate. However, the registry record does not report the primary endpoint percentage or its 95% confidence interval, so the magnitude and precision of the study's primary result cannot be assessed from the record.

7. Why No Re-analysis Is Shown

Reported as posted, not recalculated. Not a randomized comparison (allocation: non-randomized); arms are not a like-for-like control comparison. A result is recalculated only when the posted data support a clean two-arm comparison, so no result is shown beyond what the sponsor posted.

8. Statistical Interpretation

Clinical Biostats interpretation

The registry identifies a clinically defined primary outcome but does not post its result. It therefore does not establish what percentage of the UC cohort met the Week 12 clinical-response definition, nor how precisely that percentage was estimated. No point estimate or 95% confidence interval for this endpoint is reported in the registry record. A conclusion about the primary outcome cannot be drawn from the endpoint definition alone.

The primary endpoint applies to the UC cohort, not to all participants across both disease cohorts. The CD cohort has separate secondary outcomes, including clinical remission and enhanced clinical response at Week 12. Those outcomes should not be substituted for the primary UC response measure. The registry lists eight outcome measures overall, but does not report results for them or analyses for them.

The design also limits what comparisons can mean. Allocation is nonrandomized, masking is absent, and no separate control treatment is described. The UC and CD cohorts are not like-for-like comparison arms. Any outcome description would apply to the participants assessed in that cohort under this study's conditions; without a control group, the study cannot isolate treatment effects from other influences on outcomes. Open-label assessment may also be relevant when interpreting outcomes that involve symptom ratings or clinical judgment, although the registry does not describe how assessment was conducted.

The record lists serious adverse events in both cohorts, as well as other adverse events and deaths. These safety figures describe the recorded experience in the study groups; they do not by themselves establish that an event was caused by treatment. The record does not report a comparative safety analysis against a control group.

Planning illustrations based on observed effects are not equivalent to observed trial results. The registry's stated assumptions describe a normal-approximation calculation, with a two-sided significance level of 0.05, equal allocation between two arms, and effects expressed as fractions of an observed effect. The record does not provide a numeric primary effect estimate from which to interpret such planning values. Such illustrations, where shown, concern hypothetical future-study planning, not the probability that this study's finding is true or a measure of its observed power.

9. Statistical Methods Explained

The primary endpoint is binary at the participant level: each participant either meets the stated clinical-response definition at Week 12 or does not. A percentage expresses the share meeting that definition. The registry identifies the endpoint as a percentage and specifies a 95% confidence interval as its dispersion measure, but does not post either the percentage or the interval.

What does a confidence interval convey?

In general, a confidence interval describes the statistical uncertainty around an estimate under the method used to calculate it. For a percentage, a wider interval indicates less precision than a narrower interval. It does not describe the range of individual participant outcomes, and it does not remove possible bias from study design, selection, outcome assessment, or missing data. Since no interval is reported for the primary endpoint, its precision cannot be judged from the registry record.

Why does the endpoint definition matter?

The response definition requires a specified reduction in the modified Mayo total score as well as improvement in rectal bleeding. A participant meeting only part of that definition would not meet the full endpoint as written. This rule gives the endpoint a clinically interpretable threshold, while also making the estimated percentage dependent on the exact scoring and assessment procedures. The record describes the score components and the threshold, but does not provide the primary endpoint result or further details on scoring implementation.

What can be concluded from this design?

General statistical interpretation depends on how participants were assigned and whether a valid comparator exists. Here, allocation is nonrandomized and the record does not describe a separate control group. The UC and CD cohorts are not treatment comparison groups, because they differ by underlying disease and both receive vedolizumab. A contrast between their outcome percentages, if reported, would not be a randomized estimate of treatment effect. The registry record does not report an adjusted comparative analysis.

Open-label conduct means participants and study staff are not masked to treatment assignment. Since the record describes a single study drug and no randomized comparator, masking is listed as none. General considerations include the possibility that awareness of treatment could influence reporting or assessment. This is a design consideration rather than evidence that such influence occurred in this study.

Why does over-dispersion matter in general?

For count outcomes, a statistical model may assume a particular relationship between the average count and its variability. Over-dispersion means the observed variability is greater than that assumption allows; ignoring it can make uncertainty estimates too small. The primary endpoint is a participant percentage, not a count-rate endpoint. The registry does not report an over-dispersion analysis or a model that would make such an adjustment relevant to the posted primary result.

How should planning calculations be read?

The stated planning illustration uses a two-sided significance level of 0.05, equal allocation between two arms, a normal approximation, and an effect defined as a fraction of the observed effect. For time-to-event illustrations, the stated output is a total number of events; for other illustrations, it is participants per arm. These are planning assumptions, not a report of the study's own design justification, and the record does not report that justification. A sample-size illustration is not observed power. Because the registry does not report the primary effect estimate, the numerical basis for interpreting a calculation tied to that effect is absent from the record.

Analysis populations and statistical procedures also affect interpretation. The primary population is described as the FAS, including participants who received at least one dose of study drug. The record does not report details of the statistical model, covariate adjustment, handling of missing endpoint measurements, or sensitivity analyses. Those omissions prevent a fuller appraisal of how the endpoint estimate would be produced and how robust it might be.

10. Exact Estimates for Each Arm

No two-arm comparison is shown for this trial, but each arm's result can still be summarized with exact interval estimates computed from the posted counts. The Clopper-Pearson interval is exact and conservative; the Wilson interval is a common closer-to-nominal alternative; the Bayesian credible interval uses a uniform Beta(1, 1) prior. For small groups the three can differ noticeably.

ArmParticipantsEventsObserved %Clopper-Pearson 95% CIWilson 95% CIBayesian 95% credible interval
UC Cohort: Vedolizumab 300 mg411741.5%26.3% to 57.9%27.8% to 56.6%27.7% to 56.7%

R code and output

arm    <- c("UC Cohort: Vedolizumab 300 mg")
n      <- c(41)
events <- c(17)
for (i in seq_along(n)) {
  ci <- binom.test(events[i], n[i])$conf.int          # Clopper-Pearson exact interval
  cr <- qbeta(c(0.025, 0.975), 1 + events[i], 1 + n[i] - events[i])   # Bayesian, uniform Beta(1,1) prior
  wi <- (function(x, n) { p <- x / n; z <- qnorm(0.975); d <- 1 + z^2 / n
    c((p + z^2 / (2 * n) - z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d, (p + z^2 / (2 * n) + z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d) })(events[i], n[i])
  cat(sprintf("ARM|%s|%d|%d|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f\n", arm[i], n[i], events[i], 100 * events[i] / n[i],
              100 * ci[1], 100 * ci[2], 100 * wi[1], 100 * wi[2], 100 * cr[1], 100 * cr[2]))
}
ARM  UC Cohort: Vedolizumab 300 mg  41  17  41.5  26.3  57.9  27.8  56.6  27.7  56.7

11. Multiplicity, Missing Data and Analysis Populations

The registry lists eight outcome measures. It identifies the UC Week 12 clinical-response percentage based on the modified Mayo score as the primary outcome and lists secondary outcomes for clinical remission, mucosal healing, and corticosteroid-free remission in UC, as well as clinical remission, enhanced clinical response, and corticosteroid-free remission in CD. The record does not report results or analyses for these outcomes.

When multiple outcomes are tested, the chance of at least one apparently positive result can increase. General statistical practice may address this through a prespecified testing hierarchy or adjustment, but the registry record does not report whether any multiplicity strategy was planned or used. It also does not report a statistical analysis plan or interim analyses. No multiplicity-adjusted or unadjusted outcome findings are available in the record.

The primary population is described as the FAS, comprising all participants who received at least one dose of study drug. Further details about analysis populations for other outcomes are not reported in the registry record. The record does not state how missing Week 12 scores, withdrawals, or incomplete follow-up were handled, nor does it describe imputation, censoring rules, or sensitivity analyses. Missing-data methods can affect a percentage estimate when outcome status is unavailable; without those details, the possible influence cannot be evaluated.

The registry lists zero analyses. This means that analysis results are not posted in the record; it does not establish that no analyses were conducted outside the registry. The sample-size justification and the statistical analysis plan are not reported in the registry record.

12. Safety Results

The registry reports serious adverse events as affected participants divided by participants at risk.

ArmParticipants with serious adverse eventsParticipants at riskPercentage
UC Cohort: Vedolizumab 300 mg3417.3%
CD Cohort: Vedolizumab 300 mg61540.0%
Participants with at least one serious adverse event
Serious adverse events by armUC Cohort: Vedolizumab 300 mg7.3%CD Cohort: Vedolizumab 300 mg40.0%% of participants with at least one serious adverse event

Deaths

ArmDeaths (participants affected of at risk)
UC Cohort: Vedolizumab 300 mg0 of 41
CD Cohort: Vedolizumab 300 mg0 of 15

Other (non-serious) adverse events

Participants with at least one non-serious event at or above the registry's 5% reporting threshold.

ArmParticipants affected of at risk
UC Cohort: Vedolizumab 300 mg19 of 41
CD Cohort: Vedolizumab 300 mg14 of 15

Most frequent serious adverse event terms

Event termOrgan systemUC Cohort: Vedolizumab 300 mgCD Cohort: Vedolizumab 300 mg
Abdominal painGastrointestinal disorders1 of 410 of 15
COVID-19Infections and infestations0 of 411 of 15
Colitis ulcerativeGastrointestinal disorders1 of 410 of 15
Crohn's diseaseGastrointestinal disorders0 of 411 of 15
GastroenteritisInfections and infestations0 of 411 of 15
IleusGastrointestinal disorders0 of 411 of 15
Liver abscessInfections and infestations0 of 411 of 15
SepsisInfections and infestations0 of 411 of 15
UreterolithiasisRenal and urinary disorders1 of 410 of 15

Most frequent non-serious adverse event terms

Event termOrgan systemUC Cohort: Vedolizumab 300 mgCD Cohort: Vedolizumab 300 mg
NasopharyngitisInfections and infestations8 of 415 of 15
ArthritisMusculoskeletal and connective tissue disorders1 of 412 of 15
COVID-19Infections and infestations2 of 411 of 15
Colitis ulcerativeGastrointestinal disorders3 of 410 of 15
HeadacheNervous system disorders2 of 411 of 15
PyrexiaGeneral disorders2 of 411 of 15
RashSkin and subcutaneous tissue disorders2 of 411 of 15
AnaemiaBlood and lymphatic system disorders1 of 411 of 15
Aphthous ulcerGastrointestinal disorders0 of 412 of 15
Crohn's diseaseGastrointestinal disorders0 of 412 of 15

Serious events with the highest arm-level rate: covid-19 (6.7%), crohn's disease (6.7%), gastroenteritis (6.7%), ileus (6.7%), liver abscess (6.7%).

Do not overextend the safety comparison. Serious-adverse-event counts are safety observations, not efficacy outcomes, and should not be combined with the primary result into a single benefit-risk number.

The registry lists serious adverse events for the UC cohort of 41 participants at risk, with 3 affected, and for the CD cohort of 15 participants at risk, with 6 affected. It lists other adverse events for 41 participants at risk in the UC cohort, with 19 affected, and for 15 participants at risk in the CD cohort, with 14 affected. Deaths are listed as 0 in each cohort.

These figures are descriptive summaries within the study groups. The UC and CD groups are not randomized comparison arms, and the record does not provide a control group for estimating a comparative risk. The counts therefore should not be interpreted as proving that treatment caused or prevented any event. Differences between disease cohorts may reflect differences in the participants or their conditions, and are not a treatment comparison.

The serious-event terms listed are COVID-19, Crohn's disease, gastroenteritis, ileus, liver abscess, and sepsis, each at 6.7%. The record does not clarify whether participants experienced more than one listed term, so the terms should not be added together or treated as mutually exclusive. These summaries do not provide event timing, duration, outcome, or attribution in the information reported. The record's safety figures describe what was recorded; they do not by themselves establish a causal relationship.

13. What the Result Does, and Does Not, Mean

This study is designed to describe outcomes after every-four-week IV vedolizumab in Japanese participants with moderate to severe UC or CD who had secondary loss of response during every-eight-week maintenance treatment. Its primary endpoint focuses specifically on Week 12 clinical response in the UC cohort. The registry supplies the endpoint definition and the analysis population, but does not report the endpoint result. Consequently, no statement about the observed response percentage or its precision can be supported by the registry record.

The record also does not post results for the listed secondary outcomes. It cannot establish from these entries whether participants met remission, mucosal-healing, or corticosteroid-free-remission criteria. The absence of posted outcomes is not evidence that no outcome occurred; it means the registry record does not report the results needed to evaluate them.

The design is nonrandomized and open-label, and no separate control group is described. Even if cohort outcomes were reported, they would be descriptions from participants receiving the study intervention rather than controlled estimates of what would have happened under another treatment strategy. The UC and CD cohorts should not be compared as though disease assignment were randomized.

The posted safety summaries include serious and other adverse events and list no deaths in either cohort. They are useful descriptions of events recorded in the study, but without a control group and without further context they do not quantify comparative risk or establish treatment causation. Event terms may also overlap at the participant level, which the record does not clarify.

Thus, the registry record describes the study question, intervention, endpoint, and selected safety counts, but does not provide the efficacy analyses required to answer the primary question. It also does not report the statistical plan, missing-data methods, multiplicity approach, or sample-size justification. Those gaps limit assessment of both the estimates and the methods that would support them.

14. Why This Trial Matters Statistically

This study raises a focused statistical question: how to describe a defined clinical-response percentage in a population receiving more frequent IV vedolizumab after secondary loss of response during every-eight-week maintenance. The primary outcome uses a composite score and a specified threshold, so its interpretation depends on both the score components and the accompanying rectal-bleeding requirement. Reporting the percentage together with its confidence interval would be important for understanding both the magnitude and precision of the result; neither is reported in the registry record.

The design also illustrates why an intervention study should not automatically be read as a comparative trial. Nonrandomized allocation, no masking, and no separate control group mean that the record does not offer a randomized estimate against another treatment strategy. The UC and CD cohorts answer distinct disease-specific descriptive questions rather than serving as interchangeable arms.

Safety summaries matter alongside efficacy outcomes, but counts without a control group do not identify comparative safety effects. The listed serious-event terms and cohort counts provide a record of events, while leaving causality and comparative risk unresolved.

Finally, a registry entry can define outcomes and study conduct without posting analyses. In this case, the endpoint definitions are informative, but the lack of outcome results, analysis details, and missing-data methods prevents assessment of the primary estimate. The distinction between a planned study question and a reported statistical result is central to interpreting this record.

15. Limitations

The most direct limitation for interpreting the study is that the registry record does not report the primary endpoint result or its confidence interval. Without those, neither the response percentage nor its statistical precision can be evaluated. Results for the listed secondary outcomes are also not reported, despite the registry listing eight outcome measures.

The nonrandomized, open-label design and absence of a separate control group constrain causal interpretation. The registry describes UC and CD cohorts receiving the same intervention, not like-for-like treatment groups. Any apparent difference between cohorts would be confounded by their distinct disease populations and would not establish a treatment effect.

The record describes treatment and follow-up pathways, including a Week 12 assessment and later follow-up, but does not report participant flow, the number analyzed for each outcome, or reasons for missing assessments. Missing-data handling and sensitivity analyses are not reported in the registry record. This makes it difficult to judge whether incomplete outcome data could affect the endpoint estimate.

The registry does not report the statistical analysis plan, multiplicity handling, interim analyses, or sample-size justification. The stated planning assumptions are not a substitute for the study's own design rationale. The record also does not provide detailed safety context such as event timing or attribution, and does not clarify possible overlap among serious-event terms. These limitations restrict interpretation of both efficacy and safety from the posted information.

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19. Record Summary

The registry describes an open-label, Phase 3, nonrandomized, parallel study sponsored by Takeda in Japan. It evaluates IV vedolizumab 300 mg every four weeks in participants with moderate to severe UC or CD who experienced secondary loss of response during every-eight-week maintenance treatment. Enrollment is listed as 56, and the status is active, not recruiting.

The primary outcome is Week 12 clinical response in the UC cohort based on the modified Mayo score. The primary analysis population includes participants who received at least one study-drug dose. The primary result and its 95% confidence interval are not reported in the registry record. The registry lists eight outcome measures and zero analyses.

Safety summaries list serious and other adverse events in both cohorts and 0 deaths in each. The record does not report a control-group comparison, detailed statistical methods, missing-data handling, multiplicity methods, or the sample-size justification.

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