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Leukemia Phase 2 Binary Endpoint NCT01692197

E7070, Idarubicin and Cytarabine in Relapsed AML and High-Risk Myelodysplastic Syndromes: Complete Statistical Analysis

This analysis examines a completed phase 2, single-group study of E7070 with idarubicin, cytarabine, and dexamethasone in relapsed or refractory AML and high-risk MDS. The registry record describes the response endpoint and safety counts, but does not report the primary response count or an inferential analysis.

Trial start: 2013-02-01  ·  Enrollment: 43  ·  Sponsor: M.D. Anderson Cancer Center
Scope of this record

This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record. Numerical trial results on this page are restricted to the results posted in the ClinicalTrials.gov record; calculations added by Clinical Biostats are labelled as such.

1. Trial at a Glance

This page covers the registry results for E7070, Idarubicin and Cytarabine in Relapsed AML and High-Risk Myelodysplastic Syndromes (NCT01692197), a na phase 2 study. The primary outcome is Overall Response.

43
Enrollment
Phase 2
n/a
Arms
In the primary outcome
n/a
Effect
No re-analysis shown
n/a
95% CI
See limitations
FeatureRegistry value
ClinicalTrials.gov identifierNCT01692197
PhasePhase 2
ConditionLeukemia
AllocationNot applicable (single group)
Design modelSingle Group
MaskingNone (open label)
Enrollment43
Arms in the primary outcomen/a
Lead sponsorM.D. Anderson Cancer Center
Results postedYes

2. Clinical Question

Population

The study concerned patients with relapsed or refractory acute myeloid leukemia (AML) or high-risk myelodysplastic syndromes (MDS). The registry record lists Leukemia as the condition and says that 37 patients were evaluable for the primary endpoint. Enrollment was 43. The record does not give further details about participant characteristics or explain how the evaluable group relates to total enrollment.

Intervention

The treatment combination included E7070, idarubicin, cytarabine, and dexamethasone. The arm description gives E7070 as an intravenous infusion on day 1 and day 8, followed by idarubicin and cytarabine. The idarubicin and cytarabine schedules differ according to age. The dexamethasone schedule is incomplete in the registry record, so its full regimen is not reported there.

Comparator

There was a single study group, with no comparator arm listed. Allocation is recorded as not applicable, and masking as none. This design can describe outcomes among participants treated in the study, but it does not provide a concurrent control group for separating treatment-associated outcomes from other influences.

Primary question

The primary question was whether the combination was associated with an overall response during treatment, defined using complete response, complete response with incomplete platelet recovery, partial response, and marrow clearance of blast. The registry record lists the timeframe as 2 cycles (60 days), while the endpoint description also says the response definition applies during cycle 1. A primary response count, response proportion, confidence interval, or statistical test is not reported in the registry record.

3. Trial Design

This was a phase 2, single-group study sponsored by M.D. Anderson Cancer Center. The registry record gives enrollment as 43 and status as completed. The recorded start date is 2013-02-01, and the primary completion date is 2017-06-07. These dates describe the study record, not the length of follow-up for an individual participant.

Participants received a combination of E7070, idarubicin, cytarabine, and dexamethasone. The named arm is E7070 + Idarubicin + Cytarabine, while dexamethasone is included in the intervention list and described in the regimen. E7070 is specified as an intravenous infusion on day 1 and day 8, with the day 8 timing allowing a stated variation. Idarubicin is scheduled after E7070, and the cytarabine schedule varies by age. The registry record truncates the dexamethasone schedule, so its complete timing and duration are not reported there.

The study has no listed control group. Allocation is marked not applicable, and masking is recorded as none. Thus the design is not a randomized comparison, and there is no like-for-like concurrent group against which to compare response or adverse events. The study can document outcomes recorded among treated participants, but differences from an external group or from an assumed alternative treatment cannot be interpreted as randomized treatment effects.

The primary endpoint is overall response, with a registry timeframe of 2 cycles (60 days). The endpoint description also refers to response categories during cycle 1, leaving the timing description internally unclear. The record says 37 patients are evaluable for this endpoint, but does not report the response count or explain the evaluability criteria, exclusions, or follow-up completeness. Disease-free survival, duration of response, and overall survival are listed as secondary outcomes. Their results and analysis details are not reported in the registry record.

4. Participant Flow and Accounting

The registry reports how participants moved through each stage of the study. All counts below are exactly as posted; missing counts are not inferred from other stages.

Before assignment: Of the 43 participants registered, three never received the study medication.

Overall Study

StageE7070 and Idarubicin and Cytarabine
STARTED43
COMPLETED40
NOT COMPLETED3

Reasons for not completing this period:

ReasonE7070 and Idarubicin and Cytarabine
Failed Screening3

Analysis population for the primary outcome, as defined in the registry: Thirty seven patients are evaluable.

5. Baseline Characteristics

The table reproduces the baseline characteristics posted in the registry, which describe the participants analysed at baseline and help show whether the randomized groups were comparable.

CharacteristicUnitE7070 and Idarubicin and Cytarabine
Participants analysed43
Age, Categorical: <=18 yearsParticipants0
Age, Categorical: Between 18 and 65 yearsParticipants25
Age, Categorical: >=65 yearsParticipants18
Age, Continuousyears63 (25 to 75)
Sex: Female, Male: FemaleParticipants21
Sex: Female, Male: MaleParticipants22
Race (NIH/OMB): American Indian or Alaska NativeParticipants0
Race (NIH/OMB): AsianParticipants0
Race (NIH/OMB): Native Hawaiian or Other Pacific IslanderParticipants0
Race (NIH/OMB): Black or African AmericanParticipants6
Race (NIH/OMB): WhiteParticipants36
Race (NIH/OMB): More than one raceParticipants0
Race (NIH/OMB): Unknown or Not ReportedParticipants1
Region of Enrollment: United Statesparticipants43

6. Primary Endpoint

The registry lists the primary outcome as Overall Response, measured over 2 cycles (60 days).

ElementRegistry entry
Result typeCount Of Participants
Measure of spreadnot applicable
UnitParticipants
Endpoint classificationBinary Endpoint

The primary endpoint is overall response, recorded as a count of participants. The registry definition combines complete response, complete response with incomplete platelet recovery, partial response, and marrow clearance of blast. These categories represent different response descriptions, and the endpoint groups them into a single response measure. The registry record does not provide separate counts for the component categories.

Response is used as an efficacy endpoint because it records whether participants meet a specified disease-response definition over a stated treatment period. In general, a count can be converted to a proportion when the relevant denominator is clear, and a confidence interval can describe uncertainty around that estimate. The registry record says 37 patients are evaluable, but does not report the response count, proportion, or confidence interval; none can therefore be described from this record.

The timing is not fully consistent in the record. The stated timeframe is 2 cycles (60 days), while the outcome definition says the response categories apply during cycle 1. The registry record does not clarify how those statements relate or which assessment time determines the primary endpoint. That matters when interpreting response because an endpoint depends not only on its categories, but also on when and how they are assessed.

Overall response is distinct from the listed secondary outcomes of disease-free survival, duration of response, and overall survival. Those outcomes concern different aspects of the clinical course and require their own definitions and analysis details. Such details and results are not reported in the registry record.

7. Why No Re-analysis Is Shown

Reported as posted, not recalculated. Not a randomized comparison (allocation: NA); arms are not a like-for-like control comparison. A result is recalculated only when the posted data support a clean two-arm comparison, so no result is shown beyond what the sponsor posted.

8. Statistical Interpretation

Clinical Biostats interpretation

The registry record establishes that the study was completed and that overall response was the primary endpoint. It does not report the number of participants who met the response definition. Although 37 patients are described as evaluable, the response count, response proportion, and uncertainty around any estimated response proportion are not reported in the registry record. Consequently, the primary outcome cannot be quantified from the registry information.

The record lists 43 enrolled participants and says 37 were evaluable. It does not explain why these totals differ, describe exclusions from the primary analysis, or report how participants without an evaluable response were handled. Without those details, it is not possible to assess whether the evaluable group represents all enrolled participants or whether missing assessments could have affected the reported outcome.

The study is single-group, with no randomized comparator. Any observed response in such a study would describe participants in the study group, not establish what would have happened to comparable participants under another treatment or without the study combination. General factors that can affect outcomes, including participant characteristics, disease course, supportive care, and assessment procedures, cannot be separated from treatment effects by a concurrent randomized comparison in this design. This is a design limitation, not evidence that any particular factor changed the results.

The primary endpoint’s timing is also unclear: the record lists 2 cycles (60 days) as the timeframe and refers to assessment during cycle 1 in the description. The record does not clarify which timing governs the endpoint. The listed secondary outcomes—disease-free survival, duration of response, and overall survival—have no reported results or analysis details in the registry record.

The safety information is presented as counts and listed serious-event terms. The adverse-event group records 30 participants affected by serious adverse events among 40 at risk, 38 affected by other adverse events among 40 at risk, and 11 deaths. The listed serious-event terms include febrile neutropenia, lung infection, and sepsis, with percentages shown in the record. These data describe reported events in the group; they do not, on their own, establish that the treatment caused an event. The record does not report event-level timing, attribution, or a comparison group.

No analysis count is recorded, and no primary inferential result is reported. The registry record therefore supports a description of the design, endpoint definition, and recorded safety counts, but not a conclusion about the magnitude or precision of the primary response outcome. It also does not support a comparative treatment-effect estimate.

9. Statistical Methods Explained

General statistical explanation: A clinical endpoint needs a clear definition, a population in which it is assessed, and an assessment time. For this study, the endpoint is a participant count based on a combined response definition. The record identifies 37 evaluable patients and gives a timeframe of 2 cycles (60 days), but the description also refers to cycle 1. It does not clarify the timing discrepancy or state the criteria used to determine evaluability.

What does a count of participants represent?

General statistical explanation: A count reports how many people meet an event or response definition. A count alone does not convey the frequency in the study group unless its denominator is clear. A proportion uses a count and a defined denominator; an interval estimate can then express uncertainty in that proportion. The registry record reports the evaluable population size but not the number meeting the primary response definition. A response proportion or its confidence interval is therefore not reported in the registry record.

The endpoint is a composite: it includes complete response, complete response with incomplete platelet recovery, partial response, and marrow clearance of blast. In general, combining categories can make a single summary endpoint, but interpretation depends on the exact category definitions and assessment rules. The registry description names its component categories but does not report separate results for them. It also does not explain how a participant meeting more than one listed description would be classified, if that situation arose.

What can a single-group study estimate?

General statistical explanation: A single-group study can describe outcomes observed among enrolled participants. It does not directly estimate a randomized contrast between treatment strategies because it has no concurrent control group. Without random allocation to comparison groups, differences from other populations or historical results can reflect differences in participant characteristics, care, assessment, or follow-up as well as treatment. Such factors cannot be disentangled by the design alone.

This study is recorded as single-group, with allocation not applicable and masking none. The posted information does not identify a comparator. Accordingly, the design does not support a like-for-like randomized treatment comparison. This is relevant both to the primary response endpoint and to adverse-event counts: a recorded event count describes the study group, but does not provide a comparative risk estimate.

How should uncertainty be understood?

General statistical explanation: A confidence interval is a range of estimates compatible with the data under a specified statistical procedure. It is used to communicate how precisely an estimate has been measured, rather than to guarantee that a true value lies within the interval. For a binary endpoint, an interval around a response proportion would help show uncertainty in the observed response frequency. The registry record does not report a primary response estimate or confidence interval, so the precision of the response result cannot be evaluated from the record.

The record lists no analysis count and does not report a primary hypothesis test, p-value, or adjusted analysis. This absence does not establish what analyses were planned or conducted outside the registry record; those details are not reported there. There is likewise no reported statistical model for the primary endpoint. No assumptions about adjustment, stratification, or interim monitoring can be made from the posted information.

What does the sample-size illustration mean?

General statistical explanation: The record describes a planning illustration based on the observed effect, using a two-sided significance level of 0.05, equal allocation between two arms, and a normal approximation. It says the effect to detect is a stated fraction of the observed effect; time-to-event illustrations use a total event count, while other illustrations use participants per arm. These are planning assumptions for an illustration, not a description of the actual single-group design. They do not establish the study’s original sample-size justification and do not represent observed power. The actual trial has no listed second arm, so an equal-allocation, two-arm scenario should not be read as a feature of the enrolled study. Numerical illustration results and the trial’s own sample-size justification are not reported in the registry record.

In general, over-dispersion occurs when count variability exceeds what a simple model assumes. If present, it can affect standard errors and interval estimates, and a method that accounts for it may be needed. The registry record does not report a count model, an over-dispersion assessment, or a model-based primary analysis. No conclusion about whether over-dispersion was relevant to this study can be drawn from the record.

How do the safety counts differ from efficacy estimates?

General statistical explanation: Adverse-event counts summarize participants or events meeting a safety definition; their meaning depends on the reporting period, denominator, severity rules, and attribution procedures. The record gives participants at risk and affected for serious and other adverse events, plus a death count and selected serious-event terms. It does not give detailed event-level analyses, timing, attribution, or a comparative group. These counts should therefore be read descriptively, not as adjusted comparisons or proof of causation.

10. Exact Estimates for Each Arm

No two-arm comparison is shown for this trial, but each arm's result can still be summarized with exact interval estimates computed from the posted counts. The Clopper-Pearson interval is exact and conservative; the Wilson interval is a common closer-to-nominal alternative; the Bayesian credible interval uses a uniform Beta(1, 1) prior. For small groups the three can differ noticeably.

ArmParticipantsEventsObserved %Clopper-Pearson 95% CIWilson 95% CIBayesian 95% credible interval
E7070 and Idarubicin and Cytarabine371129.7%15.9% to 47.0%17.5% to 45.8%17.5% to 45.9%

R code and output

arm    <- c("E7070 and Idarubicin and Cytarabine")
n      <- c(37)
events <- c(11)
for (i in seq_along(n)) {
  ci <- binom.test(events[i], n[i])$conf.int          # Clopper-Pearson exact interval
  cr <- qbeta(c(0.025, 0.975), 1 + events[i], 1 + n[i] - events[i])   # Bayesian, uniform Beta(1,1) prior
  wi <- (function(x, n) { p <- x / n; z <- qnorm(0.975); d <- 1 + z^2 / n
    c((p + z^2 / (2 * n) - z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d, (p + z^2 / (2 * n) + z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d) })(events[i], n[i])
  cat(sprintf("ARM|%s|%d|%d|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f\n", arm[i], n[i], events[i], 100 * events[i] / n[i],
              100 * ci[1], 100 * ci[2], 100 * wi[1], 100 * wi[2], 100 * cr[1], 100 * cr[2]))
}
ARM  E7070 and Idarubicin and Cytarabine  37  11  29.7  15.9  47.0  17.5  45.8  17.5  45.9

11. Multiplicity, Missing Data and Analysis Populations

The primary endpoint is overall response. Disease-free survival, duration of response, and overall survival are listed as secondary outcomes. Testing or estimating several outcomes can raise multiplicity concerns because repeated statistical comparisons can increase the chance of at least one apparently notable result. General approaches include prespecifying a hierarchy or adjusting the interpretation of multiple tests, but the registry record does not report a multiplicity procedure, a testing hierarchy, or results for the secondary outcomes.

The registry record reports zero analyses. It does not describe a statistical analysis plan, identify planned hypothesis tests, or state whether interim analyses were planned or conducted. Those procedures are not reported in the registry record, so it is not possible to determine how multiplicity was considered or whether the posted endpoint was analyzed according to a prespecified plan.

The primary endpoint description says 37 patients are evaluable, while enrollment is 43. The registry record does not explain the difference, define the evaluable population, or state whether all enrolled participants were included in any analysis. It does not report reasons for missing assessments, missing-data assumptions, imputation procedures, or sensitivity analyses. Therefore, the potential effect of missing response information cannot be assessed from the record.

For time-to-event outcomes, interpretation generally depends on follow-up duration, event definitions, censoring rules, and the population included. The record lists disease-free survival, duration of response, and overall survival, but does not report their estimates, analysis populations, follow-up details, or censoring methods. These details are not reported in the registry record. No assumptions about how incomplete follow-up or missing outcome data were handled can be made.

12. Safety Results

The registry reports serious adverse events as affected participants divided by participants at risk.

ArmParticipants with serious adverse eventsParticipants at riskPercentage
E7070 and Idarubicin and Cytarabine304075.0%

Deaths

ArmDeaths (participants affected of at risk)
E7070 and Idarubicin and Cytarabine11 of 40

Other (non-serious) adverse events

Participants with at least one non-serious event at or above the registry's 5% reporting threshold.

ArmParticipants affected of at risk
E7070 and Idarubicin and Cytarabine38 of 40

Most frequent serious adverse event terms

Event termOrgan systemE7070 and Idarubicin and Cytarabine
Febrile NeutropeniaInfections and infestations14 of 40
Lung InfectionInfections and infestations11 of 40
SepsisInfections and infestations9 of 40
Skin InfectionInfections and infestations3 of 40
DeathGeneral disorders2 of 40
Allergic ReactionGeneral disorders1 of 40
Atrial FibrillationCardiac disorders1 of 40
Back PainGeneral disorders1 of 40
Bone Marrow HypocellularGeneral disorders1 of 40
Bone PainGeneral disorders1 of 40

Most frequent non-serious adverse event terms

Event termOrgan systemE7070 and Idarubicin and Cytarabine
NauseaGastrointestinal disorders21 of 40
DiarrheaGastrointestinal disorders17 of 40
HypokalemiaMetabolism and nutrition disorders17 of 40
FatigueGeneral disorders16 of 40
HypomagnesemiaMetabolism and nutrition disorders16 of 40
HyperbilirubinemiaMetabolism and nutrition disorders14 of 40
EdemaBlood and lymphatic system disorders14 of 40
ConstipationGastrointestinal disorders13 of 40
HyperglycemiaMetabolism and nutrition disorders13 of 40
Skin and Subcutaneous tissue disordersSkin and subcutaneous tissue disorders13 of 40

Serious events with the highest arm-level rate: febrile neutropenia (35.0%), lung infection (27.5%), sepsis (22.5%), skin infection (7.5%), death (5.0%).

Do not overextend the safety comparison. Serious-adverse-event counts are safety observations, not efficacy outcomes, and should not be combined with the primary result into a single benefit-risk number.

The registry record gives safety counts for the E7070 and idarubicin and cytarabine group. Serious adverse events are recorded for 30 participants among 40 at risk; other adverse events are recorded for 38 among 40 at risk. The record also lists 11 deaths. These are distinct entries in the safety summary, and the registry record does not explain how the death count relates to the adverse-event categories or specify whether deaths were attributed to treatment.

The leading listed serious-event terms are febrile neutropenia at 35.0%, lung infection at 27.5%, sepsis at 22.5%, skin infection at 7.5%, death at 5.0%, and allergic reaction at 2.5%. The record does not describe the term-specific denominator or provide event-level timing and attribution details. The percentages should therefore be read as the registry’s reported figures, not as a basis for calculating an unreported risk or comparing groups.

In general, an adverse event is an event recorded during a study; recording alone does not establish that treatment caused it. The single-group design provides no concurrent comparator for evaluating whether these events occurred more or less often than they would under another treatment. The safety figures describe reported experience in the study group and should not be treated as causal estimates.

13. What the Result Does, and Does Not, Mean

The record describes a completed phase 2 study of a four-drug combination in patients with relapsed or refractory AML or high-risk MDS. It specifies a single-group design and defines overall response as the primary endpoint. It also reports that 37 patients were evaluable for that endpoint, while enrollment was 43. The endpoint definition, study design, and safety counts are useful for understanding what the registry record set out to describe.

The record does not report the primary response count, an estimated response proportion, or a confidence interval. It therefore does not show the magnitude of the primary response outcome or its statistical precision. Nor does it report results for the listed secondary outcomes. A treatment effect cannot be inferred from an outcome count that is not reported, and the record does not provide a randomized comparison from which to estimate a comparative effect.

The listed safety counts indicate that serious and other adverse events were recorded among participants at risk, and the registry lists selected serious-event terms and percentages. Those observations describe reported events. Without event attribution and a comparator, they do not establish that the combination caused any specific event or quantify how safety would differ under another treatment.

Some interpretation details remain unresolved in the registry record. The endpoint timeframe is stated as 2 cycles (60 days), while the definition refers to cycle 1. The record does not explain how the 37 evaluable patients relate to enrollment of 43, define evaluability, or describe missing-data handling. It also does not report the analysis methods or results for the secondary outcomes.

In general, a registry record can document study features and posted outcomes, but its completeness determines what can be inferred. Here, the available information supports a description of the study’s design, endpoint definition, and selected safety summaries. It does not support a conclusion about the primary response estimate, the uncertainty around that estimate, or a causal or comparative treatment effect.

14. Why This Trial Matters Statistically

This study illustrates why trial design and outcome reporting need to be considered together. The registry describes a phase 2 study in a clinically defined population and identifies an overall response endpoint, but the record does not report the response count or an uncertainty estimate. Knowing the endpoint definition is not the same as knowing the observed result. Without the result, readers cannot evaluate its size or precision.

The single-group design is also central to interpretation. It can document outcomes among participants receiving the combination, but does not provide a concurrent comparison group. A response, if reported, would not by itself establish what would have occurred under another strategy. This distinction between describing an outcome and estimating a comparative effect is a basic statistical issue in clinical research.

The record additionally shows why analysis populations and endpoint timing matter. It reports 43 enrolled and 37 evaluable for the primary endpoint, without explaining the difference. Its primary timeframe is listed as 2 cycles (60 days), while the endpoint description mentions cycle 1. These are not minor details: the denominator and assessment timing define what an outcome estimate would mean.

Finally, the safety summary gives affected-participant counts and selected serious-event percentages, but does not report attribution or a comparator. Reading those figures descriptively, rather than causally, preserves the distinction between events observed during a study and effects attributable to treatment. The posted information makes these design and reporting limits important to any statistical interpretation.

15. Limitations

The registry record does not report the primary response count, proportion, or confidence interval. Although 37 patients are described as evaluable, the record does not define the evaluable population or explain how it relates to the enrollment of 43. Reasons for non-evaluability and missing-data handling are not reported in the registry record.

The endpoint timing is not fully resolved. The timeframe is listed as 2 cycles (60 days), while the outcome description refers to response during cycle 1. The record does not clarify which assessment period defines the primary endpoint. It also does not provide separate results for complete response, complete response with incomplete platelet recovery, partial response, or marrow clearance of blast.

The study has one group and no listed comparator. Consequently, it cannot provide a randomized comparison. Masking is recorded as none, and the registry record does not report details of response assessment procedures or whether assessors were independent. The potential influence of assessment procedures cannot be evaluated from the posted information.

The full dexamethasone schedule is truncated in the arm description. The record lists disease-free survival, duration of response, and overall survival as secondary outcomes but does not report their results, analysis methods, or follow-up details. It also does not report a statistical analysis plan, multiplicity procedures, interim analyses, or the trial’s own sample-size justification.

For safety, the record gives participant counts and selected serious-event percentages, but does not report detailed event timing, attribution, or the term-specific denominator. The 11 deaths are not characterized further in the registry record. These limitations restrict interpretation to the information recorded and do not establish whether unreported analyses or details exist elsewhere.

16. Related Tutorials

17. Related Statistical Calculators

18. Sources

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19. Record Summary

NCT01692197 is a completed phase 2, single-group study sponsored by M.D. Anderson Cancer Center. It enrolled 43 participants with relapsed or refractory AML or high-risk MDS and evaluated E7070 with idarubicin, cytarabine, and dexamethasone. Allocation is recorded as not applicable and masking as none.

The primary endpoint was overall response, defined using complete response, complete response with incomplete platelet recovery, partial response, and marrow clearance of blast. The record says 37 patients were evaluable, but does not report the response count or an inferential result. The stated timeframe of 2 cycles (60 days) is not reconciled with the description’s reference to cycle 1.

Disease-free survival, duration of response, and overall survival are listed as secondary outcomes, without reported results in the registry record. Safety entries include 30 participants with serious adverse events among 40 at risk, 38 with other adverse events among 40 at risk, and 11 deaths. The record does not report a comparator, analysis details, or event attribution.

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