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Wilson Disease Phase 2 Binary Endpoint NCT02273596

Efficacy and Safety Study of WTX101 (ALXN1840) in Adult Wilson Disease Patients: Complete Statistical Analysis

This analysis concerns a phase 2, open-label, single-group study of ALXN1840 in adults newly diagnosed with Wilson Disease. The registry record describes the Week 24 primary endpoint but does not report its result.

Trial start: 2014-11-24  ·  Enrollment: 29  ·  Sponsor: Alexion Pharmaceuticals, Inc.
Scope of this record

This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record. Numerical trial results on this page are restricted to the results posted in the ClinicalTrials.gov record; calculations added by Clinical Biostats are labelled as such.

1. Trial at a Glance

This page covers the registry results for Efficacy and Safety Study of WTX101 (ALXN1840) in Adult Wilson Disease Patients (NCT02273596), a na phase 2 study. The primary outcome is Percentage Of Participants With Normalized Concentrations Of NCC.

29
Enrollment
Phase 2
n/a
Arms
In the primary outcome
n/a
Effect
No re-analysis shown
n/a
95% CI
See limitations
FeatureRegistry value
ClinicalTrials.gov identifierNCT02273596
PhasePhase 2
ConditionWilson Disease
AllocationNot applicable (single group)
Design modelSingle Group
MaskingNone (open label)
Enrollment29
Arms in the primary outcomen/a
Lead sponsorAlexion Pharmaceuticals, Inc.
Results postedYes

2. Clinical Question

Population

Adults aged 18 and older who were newly diagnosed with Wilson Disease and had non-ceruloplasmin-bound copper (NCC) concentrations within or above the reference range at enrollment. The primary endpoint population is described as participants who enrolled and received at least 1 dose of study drug.

Intervention

ALXN1840, formerly WTX101, administered at individualized doses from 15 to 60 mg per day during the Treatment Period. Dose and frequency could vary according to NCC concentrations adjusted for molybdenum plasma concentration.

Comparator

No comparator group is listed. This was a single-group study, and allocation is recorded as NA. The results therefore do not provide a like-for-like comparison with another treatment or a control group.

Primary question

At Week 24, what percentage of participants had normalized NCC concentrations under the endpoint definition? Normalization included achieving or maintaining the stated adjusted NCC range, or reaching the specified reduction for participants whose NCC was above the normal reference range at enrollment.

The study also planned to evaluate safety and a range of other outcomes, including changes in NCC, neurological status, psychiatric status, clinical global impression, and quality of life. These outcomes provide additional ways to describe participants’ status during the study, but the registry record does not report numerical results for them. It lists 23 outcome measures and 0 analyses. The primary question is therefore identifiable from the endpoint description, but the posted record does not give the Week 24 percentage or its confidence interval. Without that result, the magnitude and precision of the primary endpoint estimate cannot be assessed from this record.

3. Trial Design

This was a phase 2, multi-centre, open-label study with a single group. The registry record lists 29 participants as enrolled. The study began on 2014-11-24, had a primary completion date of 2016-10-27, and is recorded as completed. Participants were adults aged 18 and older who were newly diagnosed with Wilson Disease and had NCC concentrations within or above the reference range at enrollment.

The Treatment Period was 24 weeks. ALXN1840 was administered at individualized doses ranging from 15 to 60 mg per day. The dose could be increased or reduced in response to NCC concentrations adjusted for molybdenum plasma concentration; administration could be every other day, once daily, or twice daily. The study description also specifies a planned 36-month Extension Period after the Treatment Period. The registry record does not report results from that extension in the information available for this analysis.

Open-label means the study was not masked: the masking entry is NONE. There was no listed concurrent control group, and the design is recorded as single-group. Consequently, the study can describe outcomes observed among participants receiving ALXN1840, but it cannot establish a randomized contrast against another group. The registry record does not report a protocol-level statistical plan, a sample-size justification, or details of interim analyses. Those features should not be inferred from the phase label or from the listed outcomes.

The primary endpoint was assessed at Week 24, and the population for that endpoint is described as participants who enrolled and received at least 1 dose. The record does not provide a count for that specific analysis population. The safety listing reports 28 participants at risk, which is a distinct reported denominator and should not automatically be treated as the primary endpoint denominator.

4. Participant Flow and Accounting

The registry reports how participants moved through each stage of the study. All counts below are exactly as posted; missing counts are not inferred from other stages.

Before assignment: Participants meeting all inclusion and no exclusion criteria were enrolled into the study and studied as outpatients. Participants enrolled as pre-treated with other de-coppering agents were required to undergo a 48-hour washout from their previous Wilson Disease (WD) treatment just prior to initiation of study treatment. Participants who completed the 24-week treatment period and had favorable safety profiles and WD control were offered the opportunity to participate in the Extension Period.

24-Week Treatment Period

StageALXN1840
STARTED29
Received at Least 1 Dose of Study Drug28
COMPLETED22
NOT COMPLETED7

Reasons for not completing this period:

ReasonALXN1840
Adverse Event3
Withdrawal by Participant Prior to First Dose1
Participant was unable to Come1
Physician Decision1
Protocol Deviation1

Extension Period

StageALXN1840
STARTED22
Received at Least 1 Dose of Study Drug22
COMPLETED0
NOT COMPLETED22

Reasons for not completing this period:

ReasonALXN1840
Continued into Study WTX101-301 extension (NCT03403205).19
Participant Withdrew for Personal Reasons1
Lost to Follow-up1
Protocol Deviation1

Analysis population for the primary outcome, as defined in the registry: Participants who were enrolled and received at least 1 dose of study drug.

5. Baseline Characteristics

The table reproduces the baseline characteristics posted in the registry, which describe the participants analysed at baseline and help show whether the randomized groups were comparable.

Population: Participants who were enrolled and received at least 1 dose of study drug.

CharacteristicUnitALXN1840
Participants analysed28
Age, Categorical: <=18 yearsParticipants0
Age, Categorical: Between 18 and 65 yearsParticipants28
Age, Categorical: >=65 yearsParticipants0
Age, Continuousyears34.1 (SD 11.86)
Sex: Female, Male: FemaleParticipants15
Sex: Female, Male: MaleParticipants13
Race (NIH/OMB): American Indian or Alaska NativeParticipants0
Race (NIH/OMB): AsianParticipants2
Race (NIH/OMB): Native Hawaiian or Other Pacific IslanderParticipants0
Race (NIH/OMB): Black or African AmericanParticipants0
Race (NIH/OMB): WhiteParticipants26
Race (NIH/OMB): More than one raceParticipants0
Race (NIH/OMB): Unknown or Not ReportedParticipants0

6. Primary Endpoint

The registry lists the primary outcome as Percentage Of Participants With Normalized Concentrations Of NCC, measured over Week 24.

ElementRegistry entry
Result typeNumber
Measure of spread95% Confidence Interval
Unitpercentage of participants
Endpoint classificationBinary Endpoint

The primary endpoint is the percentage of participants with normalized NCC concentrations at Week 24. NCC is a measure of copper not bound to ceruloplasmin. In the registry description, it is calculated by subtracting copper bound to ceruloplasmin from total plasma copper. Post-baseline NCC values were adjusted to account for copper bound in tripartite complexes with ALXN1840 and albumin, and the endpoint also specifies adjustment for molybdenum plasma concentration.

Normalization has a study-specific definition. It includes achieving or maintaining NCC levels in the stated range of 0.8 to 2.3 micromole per liter after adjustment, or reaching a reduction of at least 25% in NCC corrected for molybdenum when NCC was above the normal reference range at enrollment. The endpoint therefore combines a range-based criterion with a reduction criterion for the specified baseline subgroup. It is not simply a report of the average change in NCC.

A percentage endpoint is useful for expressing how many participants meet a defined target, while the accompanying 95% confidence interval is intended to communicate uncertainty around that estimate. The registry record says descriptive statistics are reported, but it does not give the Week 24 percentage or confidence interval. The endpoint definition is available; its observed result and precision are not reported in the registry record.

7. Why No Re-analysis Is Shown

Reported as posted, not recalculated. Not a randomized comparison (allocation: NA); arms are not a like-for-like control comparison. A result is recalculated only when the posted data support a clean two-arm comparison, so no result is shown beyond what the sponsor posted.

8. Statistical Interpretation

Clinical Biostats interpretation

The registry record identifies the main Week 24 question and provides the endpoint definition, but it does not report the numerical primary result. No percentage of participants meeting the normalization definition or corresponding 95% confidence interval is available in the record. It is therefore not possible to describe the observed endpoint frequency, its precision, or how the estimate relates to the study’s stated endpoint definition using the posted results summarized in the record.

The study’s design also determines what a result could establish. It is a single-group, open-label study with allocation recorded as NA and no listed comparator. A percentage observed among participants receiving ALXN1840 would describe outcomes in that group. Without a concurrent comparison group, it would not estimate a randomized difference between treatments. Changes over time could be described, but causal attribution to the intervention would be limited by the absence of a control group and by the open-label design.

The denominator requires care. The primary endpoint population is defined as participants enrolled who received at least 1 dose, but the number in that population is not reported. The study enrolled 29 participants, while the safety entry lists 28 at risk. These are not interchangeable denominators, and the registry record does not explain the relationship between them for the primary endpoint. The 28-person safety denominator should not be substituted for the missing primary analysis denominator.

The registry lists 23 outcome measures, including secondary assessments of NCC, neurological and psychiatric status, clinical global impression, and quality of life. It lists 0 analyses, and numerical outcome findings for these measures are not present in the record. Thus, those outcome names indicate what was assessed or planned for assessment, not the direction or size of any observed change.

For safety, the record reports 11 participants affected by serious adverse events among 28 at risk, 26 participants affected by other adverse events among 28 at risk, and 0 deaths. These entries describe reported event experience in the study group. They do not provide a comparison with an untreated or alternative-treatment group, nor do they establish that an event was caused by ALXN1840. The six listed serious adverse event terms are each reported at 3.6%; those term-specific entries should be read separately from the overall count of participants affected by serious adverse events.

Overall, the record supports a description of the design, endpoint, and selected safety counts, but not an efficacy estimate for the primary endpoint. Interpretation should stop short of claims about the treatment effect, since the primary numerical result and a comparative estimate are not reported.

9. Statistical Methods Explained

What does a percentage endpoint describe?

A percentage endpoint counts participants who satisfy a prespecified definition and relates that count to the relevant analysis population. Here, the definition is tied to NCC at Week 24 and includes two routes to meeting the endpoint, depending on the participant’s baseline NCC status. This approach answers a question about the proportion meeting a target, rather than about the average amount of change across participants.

The definition matters for interpretation. A participant could qualify by achieving or maintaining NCC within the stated adjusted range, or, if baseline NCC was above the normal reference range, by reaching the stated reduction threshold. These criteria do not represent the same measurement in every participant. The registry record does not report how many participants met each route, whether all endpoint data were available, or the final overall percentage.

What does a confidence interval convey?

In general, a confidence interval expresses the uncertainty associated with an estimate under the statistical method used. A narrower interval indicates greater precision than a wider interval, while the interval’s location indicates the range of values compatible with the data and method. A confidence interval is not itself a treatment comparison and does not correct for the absence of a control group.

The primary endpoint specifies a 95% confidence interval, but its bounds are not reported in the registry record. The interval’s width and location therefore cannot be assessed. No interval should be reconstructed without the relevant result and analysis details. In a single-group study, even a precisely estimated percentage would describe the study group; precision alone would not establish what would have occurred under another treatment or without treatment.

Why does the endpoint adjust NCC?

The endpoint description distinguishes the NCC calculation from later adjustments. NCC is calculated by subtracting copper bound to ceruloplasmin from total plasma copper. The record says post-baseline values were adjusted to account for copper bound in tripartite complexes with ALXN1840 and albumin, and the primary endpoint refers to NCC adjusted for molybdenum plasma concentration. These are features of the measure’s definition in this study. The registry record does not provide further laboratory or modeling details, so additional assumptions about the adjustment procedure are not warranted.

How should the design shape statistical interpretation?

A single-group study has no listed concurrent group against which to estimate a treatment contrast. Its descriptive statistics can characterize outcomes among the participants observed, but cannot by themselves separate intervention effects from other influences on outcomes. Open-label conduct also means masking was NONE. The registry record does not report whether outcome assessors were masked or whether any other bias-reduction procedures were used.

The phase 2 designation and enrollment count do not establish the rationale for the sample size. A sample-size justification and the trial’s own statistical analysis plan are not reported in the registry record. Any sample-size planning illustration based on the observed effect is not evidence of the trial’s original design rationale and is not observed power. The stated planning assumptions are a two-sided significance level of 0.05, equal allocation between two arms, a normal approximation, and an effect to detect defined as a fraction of the observed effect. Those assumptions describe an illustration, not this single-group study’s reported analysis; the registry record does not provide an observed primary effect.

Why can over-dispersion matter in general?

In general, over-dispersion occurs when observed variability is greater than a statistical model assumes. If a model does not allow enough variability, its uncertainty estimates may be too small and its confidence intervals too narrow. The registry record does not identify an over-dispersion model or report that over-dispersion was assessed for this endpoint. This general consideration should not be mistaken for a description of the analysis used in this study.

What analysis details are missing?

The record states that descriptive statistics are reported for the primary endpoint, but it does not specify the calculation method for the confidence interval, the handling of missing Week 24 observations, or any sensitivity analysis. It also does not report an interim-analysis plan, adjustment for multiple outcomes, or a detailed account of analysis populations beyond the primary population definition. No such methods should be inferred from the listed endpoint or study design.

10. Exact Estimates for Each Arm

No two-arm comparison is shown for this trial, but each arm's result can still be summarized with exact interval estimates computed from the posted counts. The Clopper-Pearson interval is exact and conservative; the Wilson interval is a common closer-to-nominal alternative; the Bayesian credible interval uses a uniform Beta(1, 1) prior. For small groups the three can differ noticeably.

ArmParticipantsEventsObserved %Clopper-Pearson 95% CIWilson 95% CIBayesian 95% credible interval
ALXN1840282485.7%67.3% to 96.0%68.5% to 94.3%68.3% to 94.2%

R code and output

arm    <- c("ALXN1840")
n      <- c(28)
events <- c(24)
for (i in seq_along(n)) {
  ci <- binom.test(events[i], n[i])$conf.int          # Clopper-Pearson exact interval
  cr <- qbeta(c(0.025, 0.975), 1 + events[i], 1 + n[i] - events[i])   # Bayesian, uniform Beta(1,1) prior
  wi <- (function(x, n) { p <- x / n; z <- qnorm(0.975); d <- 1 + z^2 / n
    c((p + z^2 / (2 * n) - z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d, (p + z^2 / (2 * n) + z * sqrt(p * (1 - p) / n + z^2 / (4 * n^2))) / d) })(events[i], n[i])
  cat(sprintf("ARM|%s|%d|%d|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f|%.1f\n", arm[i], n[i], events[i], 100 * events[i] / n[i],
              100 * ci[1], 100 * ci[2], 100 * wi[1], 100 * wi[2], 100 * cr[1], 100 * cr[2]))
}
ARM  ALXN1840  28  24  85.7  67.3  96.0  68.5  94.3  68.3  94.2

11. Multiplicity, Missing Data and Analysis Populations

The registry record lists 23 outcome measures, including the primary endpoint and secondary outcomes covering NCC, time to normalization, neurological and psychiatric status, clinical global impression, and quality of life. It also lists 0 analyses. The record does not report how the number of outcomes was considered in the statistical plan or whether any multiplicity adjustment was used.

In general, evaluating many outcomes can increase the chance that at least one result appears notable by chance when each is tested separately. A multiplicity strategy can define how to interpret a family of tests, but no such strategy is reported. The listed outcomes alone do not show which tests, if any, were performed or how their results were handled.

Missing-data methods are not reported in the registry record. The primary endpoint population is described as participants who enrolled and received at least 1 dose, but the record does not state the number with an evaluable Week 24 measurement, how missing observations were treated, or whether any imputation or sensitivity analyses were used. The enrollment count of 29 and the safety at-risk count of 28 do not establish the primary analysis denominator.

The record also does not report a detailed analysis-population definition beyond the stated primary population, nor an interim-analysis plan or the protocol-level statistical analysis plan. These omissions limit assessment of how the endpoint was analyzed and how robust its estimate would be to missing observations or alternative analysis choices. Because the numerical primary result is not reported either, its statistical uncertainty and any relationship to secondary findings cannot be evaluated from the registry record.

12. Safety Results

The registry reports serious adverse events as affected participants divided by participants at risk.

ArmParticipants with serious adverse eventsParticipants at riskPercentage
ALXN1840112839.3%

Deaths

ArmDeaths (participants affected of at risk)
ALXN18400 of 28

Other (non-serious) adverse events

Participants with at least one non-serious event at or above the registry's 5% reporting threshold.

ArmParticipants affected of at risk
ALXN184026 of 28

Most frequent serious adverse event terms

Event termOrgan systemALXN1840
AgranulocytosisBlood and lymphatic system disorders1 of 28
NeutropeniaBlood and lymphatic system disorders1 of 28
Hepato-lenticular degenerationCongenital, familial and genetic disorders1 of 28
DysphagiaGastrointestinal disorders1 of 28
Gait disturbanceGeneral disorders1 of 28
Alanine aminotransferase increasedInvestigations1 of 28
Hepatic enzyme increasedInvestigations1 of 28
Back painMusculoskeletal and connective tissue disorders1 of 28
Neurological decompensationNervous system disorders1 of 28
SyncopeNervous system disorders1 of 28

Most frequent non-serious adverse event terms

Event termOrgan systemALXN1840
Alanine aminotransferase increasedInvestigations10 of 28
Aspartate aminotransferase increasedInvestigations9 of 28
Urinary tract infectionInfections and infestations8 of 28
Gamma-glutamyltransferase increasedInvestigations8 of 28
FatigueGeneral disorders6 of 28
Hepatic enzyme increasedInvestigations6 of 28
HeadacheNervous system disorders6 of 28
TremorNervous system disorders5 of 28
ConstipationGastrointestinal disorders4 of 28
Back painMusculoskeletal and connective tissue disorders4 of 28

Serious events with the highest arm-level rate: agranulocytosis (3.6%), neutropenia (3.6%), hepato-lenticular degeneration (3.6%), dysphagia (3.6%), gait disturbance (3.6%).

Do not overextend the safety comparison. Serious-adverse-event counts are safety observations, not efficacy outcomes, and should not be combined with the primary result into a single benefit-risk number.

The safety listing reports 28 participants at risk for ALXN1840. Among them, 11 were affected by serious adverse events, and 26 were affected by other adverse events. The record reports 0 deaths. These are counts of participants, not a comparison between treatment groups; the study had a single group and no listed control.

The listed serious adverse event terms are Agranulocytosis, Neutropenia, Hepato-lenticular degeneration, Dysphagia, Gait disturbance, and Alanine aminotransferase increased. Each term is reported at 3.6%. These term-specific percentages should not be added together or treated as the overall proportion with serious adverse events: a participant may contribute to more than one event term, and the record does not provide participant-level overlap.

Adverse event counts describe events recorded during the study, not necessarily events caused by the study drug. The registry record does not provide a causal assessment for each event term or a comparison rate from another group. The safety figures should therefore be read as descriptive observations among the participants at risk, not as comparative evidence.

13. What the Result Does, and Does Not, Mean

The record establishes that this was an open-label, single-group phase 2 study in adults newly diagnosed with Wilson Disease, with a 24-week Treatment Period and a Week 24 primary endpoint focused on normalized NCC concentrations. It also gives the endpoint’s definition, the intended population, and selected safety counts. These details help clarify what the study set out to describe and how the primary outcome was defined.

The record does not report the numerical primary endpoint result or its 95% confidence interval. It therefore does not show what percentage met the endpoint definition or how precisely that percentage was estimated. Although the registry lists secondary outcome measures, it does not report numerical findings for those outcomes in the record used for this analysis. The presence of an outcome in the registry is not evidence of a particular result.

Even if a single-group endpoint percentage were available, it would describe outcomes in the observed study group rather than a randomized comparison. The absence of a comparator limits conclusions about differences relative to another treatment or no treatment. Open-label conduct is another design feature relevant to interpretation, while the registry record does not report additional masking details or procedures that might address bias.

The safety counts likewise describe participants in the study group. They do not establish whether an event was caused by ALXN1840, and they do not quantify how event rates compare with another group. Taken together, the registry record supports a careful account of the study’s design and reported safety experience, but it does not support a conclusion about the size of the primary endpoint result or a comparative treatment effect.

14. Why This Trial Matters Statistically

This study illustrates why an endpoint definition and an endpoint result are different kinds of information. The registry describes a specific Week 24 definition for normalized NCC, including adjustment for molybdenum plasma concentration and criteria that depend on baseline NCC. That definition identifies what the investigators intended to count. Without the numerical percentage and confidence interval, readers cannot assess the observed frequency or its precision.

The design also makes the distinction between description and comparison central. A single-group, open-label study can provide descriptive observations among participants receiving ALXN1840, but it does not provide a concurrent control contrast. A numerical result, if reported, would need to be interpreted in that design context rather than as a randomized estimate of treatment difference.

The record also shows why denominators need to be tied to their purpose. The study enrolled 29 participants, the primary endpoint population is defined by receiving at least 1 dose, and the safety entry identifies 28 participants at risk. The record does not give the number analyzed for the primary endpoint. Treating these counts as interchangeable would obscure which participants contributed to each result.

Finally, the registry lists many outcome measures but does not report analyses or numerical endpoint findings in the record. Without the analysis plan, missing-data methods, or multiplicity approach, readers cannot fully assess how the listed outcomes were handled. These are not minor details: they shape how uncertainty and the breadth of the reported findings should be understood.

15. Limitations

Several trial-specific limitations follow from the registry information. The study is single-group and open-label, with no listed comparator. This prevents a like-for-like comparison and limits causal interpretation of any changes observed during treatment. The record does not report masking of outcome assessors or other methods that might reduce bias.

The principal limitation for interpreting the primary endpoint is that its Week 24 result and 95% confidence interval are not reported in the registry record. The record describes the endpoint definition and says descriptive statistics are reported, but it does not give the estimate. The number of participants included in the primary endpoint analysis is also not reported. Although 29 participants were enrolled and 28 were listed as at risk for safety, neither count should be assumed to be the primary endpoint denominator.

The registry lists 23 outcome measures and 0 analyses. Numerical results for the listed secondary outcomes are not available in the record, and multiplicity handling is not reported. Missing-data methods, sensitivity analyses, an interim-analysis plan, a detailed statistical analysis plan, and a sample-size justification are also not reported. These gaps prevent assessment of the analysis decisions and the robustness of endpoint estimates.

The study description includes a planned 36-month Extension Period, but extension results are not reported in the record used. The six serious adverse event terms and their percentages are available, along with overall affected-participant counts, but no comparison group or event-level causal assessment is reported. These limitations constrain both efficacy interpretation and comparative safety assessment.

16. Related Tutorials

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18. Sources

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19. Record Summary

NCT02273596 is a completed phase 2, multi-centre, open-label, single-group study of ALXN1840 in adults newly diagnosed with Wilson Disease. The registry lists 29 participants enrolled. The Treatment Period lasted 24 weeks, with individualized doses from 15 to 60 mg per day, followed by a planned 36-month Extension Period.

The primary endpoint was the percentage of participants with normalized NCC concentrations at Week 24. The registry record describes its definition and states that descriptive statistics were reported, but the numerical result and 95% confidence interval are not reported in the registry record. It lists 23 outcome measures and 0 analyses.

The safety entry lists 28 participants at risk, 11 affected by serious adverse events, 26 affected by other adverse events, and 0 deaths. These are descriptive figures from a single-group study, not comparative treatment estimates.

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