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Atopic Dermatitis Phase 3 Binary Endpoint NCT03796676

JAK1 Inhibitor With Medicated Topical Therapy in Adolescents With Atopic Dermatitis: Complete Statistical Analysis

This analysis examines a phase 3 trial of PF-04965842 co-administered with medicated topical therapy in adolescents with moderate-to-severe atopic dermatitis. It focuses on the Week 12 Investigator’s Global Assessment response and distinguishes the registry’s reported analysis from unadjusted recalculations.

Trial start: 2019-02-18  ·  Enrollment: 287  ·  Sponsor: Pfizer
Scope of this record

This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record. Numerical trial results on this page are restricted to the results posted in the ClinicalTrials.gov record; calculations added by Clinical Biostats are labelled as such.

1. Trial at a Glance

This page covers the registry results for JAK1 Inhibitor With Medicated Topical Therapy in Adolescents With Atopic Dermatitis (NCT03796676), a randomized phase 3 study. The primary outcome is Percentage of Participants Achieving Investigator's Global Assessment (IGA) Response of 'Clear' (0) or 'Almost Clear' (1) and ≥2 Points Improvement From Baseline at Week 12.

287
Enrollment
Phase 3
3
Arms
In the primary outcome
+17.1 pts
Risk difference
PF-04965842 100mg QD
3.7 to 30.5 pts
95% CI
Two-sided
FeatureRegistry value
ClinicalTrials.gov identifierNCT03796676
PhasePhase 3
ConditionAtopic Dermatitis
AllocationRandomized
Design modelParallel
MaskingQuadruple
Enrollment287
Arms in the primary outcome3
Lead sponsorPfizer
Results postedYes

2. Clinical Question

Population

Adolescents 12 to <18 years of age with moderate-to-severe atopic dermatitis who were randomly assigned and took at least one dose of study intervention. The primary analysis population included those participants; the number analyzed refers to those evaluable at the specified time point.

Intervention

PF-04965842 at 100 mg QD or 200 mg QD, co-administered with background medicated topical therapy.

Comparator

Placebo co-administered with background medicated topical therapy.

Primary question

At Week 12, what percentage in each group achieved an Investigator’s Global Assessment response of clear or almost clear, together with at least a 2-point improvement from baseline?

The comparison is about the proportion of participants meeting a defined response threshold, not the average change in a continuous severity score. Participants who withdrew were counted as nonresponders for this primary endpoint. That rule means withdrawal did not remove a participant from the response definition as if the outcome were unknown; instead, the primary outcome classification treated withdrawal as failure to meet the endpoint.

The registry record describes a randomized, double-blind, placebo-controlled, parallel-group phase 3 study. Its stated scope is efficacy and safety of PF-04965842 used with medicated topical therapy in adolescents with moderate-to-severe atopic dermatitis. The main comparison is each active-dose group against placebo. The registry record does not report the details of the background topical regimens or a separate comparison between the active doses.

3. Trial Design

This was a phase 3 randomized, double-blind, placebo-controlled, multicenter, parallel-group study. The registry record lists quadruple masking and an enrollment of 287 participants. Study start was 2019-02-18, primary completion was 2020-04-08, and the status is completed. The condition is atopic dermatitis, and Pfizer is listed as sponsor.

Participants were adolescents 12 to <18 years of age with moderate-to-severe atopic dermatitis. The active groups received PF-04965842 100 mg QD or 200 mg QD, alongside background medicated topical therapy. The comparator was placebo alongside that background therapy. The trial description identifies randomized allocation and a parallel model; participants were assigned to a study group rather than being described as crossing between treatments. The registry lists double blinding in its summary and quadruple masking in its design details.

The primary endpoint was assessed from baseline to Week 12. It counted participants with an IGA rating of clear or almost clear and at least a 2-point improvement from baseline. The endpoint description states that withdrawn participants counted as nonresponders. The efficacy analysis population included participants randomly assigned to study intervention who took at least one dose, while the analyzed number refers to participants evaluable at the particular time point. Those definitions matter because the enrolled total and the numbers contributing to an endpoint need not be identical.

The registry record does not report the original sample-size justification, the intended statistical analysis plan, the trial’s allocation ratio, the details of the background topical therapy, or the masking procedures. It also does not state whether interim analyses were planned or conducted. The posted result should therefore be interpreted in light of the endpoint definition and analyses actually recorded, without assuming unreported protocol details.

4. Participant Flow and Accounting

The registry reports how participants moved through each stage of the study. All counts below are exactly as posted; missing counts are not inferred from other stages.

Before assignment: A total of 287 adolescent participants were randomized to the study, and 285 adolescent participants received study treatment, including 96 participants in the placebo group, 95 participants in the abrocitinib 100 mg QD group, and 94 participants in the abrocitinib 200 mg QD group.

Overall Study

StagePlaceboPF-04965842 100mg QDPF-04965842 200mg QD
STARTED969594
COMPLETED909291
NOT COMPLETED633

Reasons for not completing this period:

ReasonPlaceboPF-04965842 100mg QDPF-04965842 200mg QD
Adverse Event212
Lost to Follow-up210
Protocol Violation001
Withdrawal by Subject110
Participant did not complete Week 16 due to COVID-19 impact100

Analysis population for the primary outcome, as defined in the registry: The analysis population included all participants randomly assigned to study intervention and who took at least 1 dose of study intervention. Number of Participants Analyzed refers to the number of participants evaluable for this time point.

5. Baseline Characteristics

The table reproduces the baseline characteristics posted in the registry, which describe the participants analysed at baseline and help show whether the randomized groups were comparable.

Population: Baseline analysis population included all participants randomly assigned to study intervention and who took at least 1 dose of study intervention. Participants were analyzed according to the intervention they actually received.

CharacteristicUnitPlaceboPF-04965842 100mg QDPF-04965842 200mg QDTotal
Participants analysed969594285
Age, ContinuousYears14.8 (SD 1.7)15.1 (SD 1.8)14.7 (SD 1.8)14.9 (SD 1.7)
Sex: Female, Male: FemaleParticipants525038140
Sex: Female, Male: MaleParticipants444556145
Ethnicity (NIH/OMB): Hispanic or LatinoParticipants25262576
Ethnicity (NIH/OMB): Not Hispanic or LatinoParticipants656369197
Ethnicity (NIH/OMB): Unknown or Not ReportedParticipants66012
Race/Ethnicity, Customized: WhiteParticipants565252160
Race/Ethnicity, Customized: Black or African AmericanParticipants39517
Race/Ethnicity, Customized: AsianParticipants32313194
Race/Ethnicity, Customized: American Indian or Alaska NativeParticipants1348
Race/Ethnicity, Customized: Native Hawaiian or Other Pacific IslanderParticipants1012
Race/Ethnicity, Customized: MultiracialParticipants1012
Race/Ethnicity, Customized: Not reportedParticipants2002

6. Primary Endpoint

The registry lists the primary outcome as Percentage of Participants Achieving Investigator's Global Assessment (IGA) Response of 'Clear' (0) or 'Almost Clear' (1) and ≥2 Points Improvement From Baseline at Week 12, measured over Baseline to Week 12.

ElementRegistry entry
Result typeNumber
Measure of spread95% Confidence Interval
UnitPercentage of participants
Endpoint classificationBinary Endpoint

The primary endpoint is the percentage of participants who had an IGA response of clear or almost clear at Week 12 and improved by at least 2 points from baseline. IGA is a global assessment of atopic dermatitis severity that reflects erythema, induration and scaling. The scale runs from 0 to 4: clear, almost clear, mild, moderate and severe, respectively. The endpoint therefore requires both a low Week 12 severity category and a specified improvement from the participant’s starting assessment.

A threshold endpoint is useful when the study question is framed around the proportion of participants who reach a predefined response state. It is different from asking whether the mean score changed, because participants are classified as responders or nonresponders according to the stated criteria. The resulting percentage is straightforward to interpret as the share meeting the endpoint in each group, but it does not describe the full distribution of score changes or the degree of improvement among people who do not cross the threshold.

The registry specifies that participants who withdrew were counted as nonresponders. This rule makes withdrawal part of the endpoint classification and can affect the observed response percentage. The registry’s analysis population also specifies that participants had to be randomly assigned and take at least one dose, with the analyzed number referring to those evaluable at the time point. These definitions identify who contributes to the reported percentage and how withdrawal is handled.

7. Results Posted in the Registry

Risk difference: PF-04965842 100mg QD

+17.1

95% CI: 3.7 to 30.5 percentage points

Recalculated from the posted summary statistics

Primary outcome by arm, with 95% confidence intervals
Primary outcome by arm with 95% confidence intervals13.022.431.941.350.860.3Placebo (n=94)PF-04965842 100mg QD (n=89)PF-04965842 200mg QD (n=93)% of participants (95% CI)
Treatment effect versus the control arm
Forest plot of risk difference (percentage points) vs control (95% CI)PF-04965842 100mg QDPF-04965842 200mg QD-2.815.3413223038risk difference (percentage points) vs control (95% CI)

8. Secondary Efficacy Endpoints

The registry also posts results for secondary outcomes. For each outcome below, the endpoint type, the test applied to the posted summary statistics, the result and its interpretation are given in turn. Secondary endpoints are usually not adjusted for multiple testing, so they support rather than confirm the primary finding.

Secondary outcomeTypeEffect measureEstimate (95% CI)Planning size, 80% power
Percentage of Participants Achieving Percentage BSA < 5% at Week 12Binary EndpointRisk difference+13.7 pts (0.4 to 27.1)178 per arm
Plasma PF-04965842 Concentration at Week 8Continuous EndpointMean difference24.45 (4.46 to 44.44)81 per arm
Plasma PF-04965842 Concentration at Week 12Continuous EndpointMean difference784.40 (488.59 to 1,080)14 per arm

Percentage of Participants Achieving Percentage BSA < 5% at Week 12

Treatment effect versus the control arm
Forest plot of risk difference (percentage points) vs control (95% CI)PF-04965842 100mg QDPF-04965842 200mg QD-3.243.279.77162329risk difference (percentage points) vs control (95% CI)

Plasma PF-04965842 Concentration at Week 8

Treatment effect versus the control arm
Forest plot of mean difference vs control (95% CI)PF-04965842 200mg QD-3.566.7517273848mean difference vs control (95% CI)

Plasma PF-04965842 Concentration at Week 12

Treatment effect versus the control arm
Forest plot of mean difference vs control (95% CI)PF-04965842 200mg QD-861644156659161,167mean difference vs control (95% CI)

The registry includes secondary clinical outcomes that examine additional response thresholds, symptom measures, and body-surface involvement, alongside plasma concentration outcomes. Collectively, these outcomes broaden the picture beyond the primary IGA response definition. They do not measure exactly the same construct: a symptom score, a body-surface threshold, and a global severity assessment each capture different aspects of the recorded outcomes.

For the posted Percentage BSA < 5% outcome at Week 12, the percentages were 24.5% for placebo, 38.2% for 100 mg QD, and 36.6% for 200 mg QD. The unadjusted comparison with placebo had p = 0.045 for 100 mg QD and p = 0.073 for 200 mg QD. These results offer a separate view of the outcome and do not redefine the primary IGA endpoint. The concentration outcomes are pharmacokinetic measures, rather than clinical response measures, and should not be read as direct substitutes for clinical outcomes.

Overall, the secondary outcomes address related but nonidentical questions. Similar direction across some measures can add context, while variation across measures can reflect different definitions, timing, analyzed populations, and uncertainty. The posted results do not establish that every secondary measure supports the same inference as the primary endpoint. In particular, secondary findings should be considered alongside their own estimates and intervals rather than summarized as one overall treatment effect.

Multiplicity is important because numerous secondary outcomes and analyses are listed. Unless a prespecified testing strategy controls the interpretation of multiple comparisons, isolated unadjusted p-values carry less confirmatory weight than the designated primary analysis. The registry record does not report the multiplicity procedure, if any. Secondary results are therefore most useful as contextual and exploratory evidence, with attention to effect estimates, precision, outcome definitions, and the possibility of chance findings across a collection of tests.

Secondary outcomes registered for this trial, for reference (only those above were recalculated):

9. Statistical Interpretation

Clinical Biostats interpretation

At Week 12, the posted response percentage was 24.5% with placebo, 41.6% with PF-04965842 100 mg QD, and 46.2% with PF-04965842 200 mg QD. Each active-dose percentage was higher than the placebo percentage in the posted results. These are group-level response proportions for the specified IGA threshold, not statements about every participant or about outcomes outside this endpoint.

The registry’s own reported comparisons use the Cochran-Mantel-Haenszel method. For 100 mg QD versus placebo, the reported estimated difference was 16.7 percentage points, with a 95% confidence interval from 3.5 to 29.9 and p = 0.015. For 200 mg QD versus placebo, the reported estimated difference was 20.6 percentage points, with a 95% confidence interval from 7.3 to 33.9 and p = 0.003. Both analyses are labelled superiority in the registry. These reported estimates and tests are distinct from the unadjusted recalculations based on the posted arm-level summaries.

The unadjusted recalculation estimates a risk difference of 0.171 for 100 mg QD compared with placebo, with a 95% confidence interval from 0.037 to 0.305 and an unadjusted p-value of 0.014. For 200 mg QD, the unadjusted risk difference is 0.218, with a 95% confidence interval from 0.084 to 0.351 and an unadjusted p-value of 0.002. These recalculations are simple comparisons of the posted response summaries and do not replace the sponsor’s recorded method. The registry’s reported estimates should be treated as the trial’s own analyses.

The confidence intervals indicate uncertainty around the estimated group differences. They are compatible with positive differences for both active-dose comparisons under the methods used to calculate those intervals. They do not show the range of individual responses, and they do not establish that the same difference would occur in every setting. The trial enrolled adolescents in a specific study context, and the endpoint is limited to the Week 12 IGA response definition.

The primary result also does not, by itself, describe other efficacy outcomes, longer-term outcomes, or the full safety profile. Secondary outcomes in the registry include other clinical response thresholds and symptom measures, but they are separate analyses. The registry lists no adjustment information for multiplicity, so the primary finding should be distinguished from the broader collection of secondary comparisons. Overall, the posted primary results show higher response percentages in both active groups than in the placebo group, with uncertainty quantified by the reported intervals and tests.

10. Statistical Methods Explained

What does a response percentage represent?

The primary endpoint is binary for each participant: the participant either meets the Week 12 IGA response definition or does not. The arm-level percentage is the proportion classified as responders among those analyzed at that time point. This presentation is appropriate for a threshold question, but it compresses a more detailed clinical score into two categories. It does not show how far a nonresponder’s score changed, nor does it distinguish participants who nearly met the threshold from those who did not improve.

For this endpoint, clear or almost clear is not sufficient on its own. The response definition also requires at least a 2-point improvement from baseline. The registry states that withdrawal was counted as nonresponse. That is an outcome-handling rule rather than a claim that every withdrawn participant had no improvement; it assigns a classification for the analysis.

What is a risk difference?

A risk difference subtracts the response proportion in the comparison group from the response proportion in the active group. It expresses the contrast on the same percentage-point scale as the underlying proportions. The recalculated risk differences are unadjusted comparisons from the posted summaries. They are useful for interpreting the size and direction of a simple group contrast, but they are not the same as the registry’s Cochran-Mantel-Haenszel estimates.

A confidence interval for a difference describes uncertainty in the estimated contrast under the statistical method used. It gives a range of values compatible with the data and method at the stated confidence level. It is not a range containing a specified share of individual participant outcomes, and it is not a guarantee that the true difference lies within the displayed endpoints.

How does the reported method differ?

The registry reports Cochran-Mantel-Haenszel estimates of difference for the two active-versus-placebo comparisons. This method is used for comparing categorical outcomes and can combine information across strata when such strata are part of the analysis. The registry record does not report the stratification details, so no particular stratification variables should be assumed. The reported p-values and confidence intervals belong to those sponsor-reported analyses.

The recalculated values use the posted arm-level response summaries to form simple, unadjusted contrasts. Their estimates and p-values may differ from the registry’s own results because the calculations are not the same analysis procedure. The registry record does not identify the recalculations as the prespecified trial analysis. There is no discrepancy flag for this result, and the sponsor’s reported analysis remains the trial’s own recorded result.

What does a p-value convey?

A p-value measures how unusual data at least as inconsistent with a specified null hypothesis would be under the assumptions of the test. It is not the probability that the null hypothesis is true, nor does it measure the size or clinical importance of an effect. Interpretation should consider the estimated difference and its interval as well as the test result. A small p-value does not eliminate uncertainty, and a p-value alone does not describe the range of plausible effect sizes.

The registry labels both primary comparisons as superiority analyses. The reported p-values are 0.015 for 100 mg QD versus placebo and 0.003 for 200 mg QD versus placebo. The unadjusted recalculated p-values are 0.014 and 0.002, respectively. These are separate outputs from different analyses and should not be mixed as if they came from a single model.

Why can the analysis population matter?

The primary endpoint description says the analysis population included all participants randomly assigned to study intervention who took at least one dose. It also clarifies that the number analyzed refers to the number evaluable at the time point. That means the count attached to a result is not necessarily the same as the overall enrollment. The endpoint description further says that withdrawal was counted as nonresponse. The registry record does not report additional details about missing-data methods, imputation beyond that rule, or sensitivity analyses.

General statistical principle: missing outcomes can affect an estimate when the likelihood of missingness is related to response. A prespecified and fully described approach helps readers assess that possibility. Here, the stated withdrawal rule is known, but other missing-data procedures are not reported in the registry record. Conclusions should not assume additional methods were used.

Why does multiplicity matter?

The registry lists many secondary outcomes and analyses in addition to the primary endpoint. When multiple hypotheses are tested, the chance of obtaining at least one apparently notable result by chance can rise if no multiplicity procedure is used. General statistical practice may address this through a prespecified testing hierarchy or another adjustment, but the registry record does not report whether such a plan was used for these results. Therefore, secondary p-values should not automatically be interpreted as confirmatory evidence with the same status as a designated primary analysis.

The primary endpoint is clearly identified, and its reported comparisons are described as superiority analyses. However, the registry record does not provide a complete statistical analysis plan, details of interim analyses, or the original sample-size justification. Those omissions limit the ability to reconstruct the full planned inferential framework from the registry alone.

11. Confidence Intervals and Precision

The primary endpoint confidence intervals quantify uncertainty in the response percentages and in the differences between groups. The placebo response was 24.5%, with a 95% confidence interval from 15.8 to 33.2. The 100 mg QD response was 41.6%, with a 95% confidence interval from 31.3 to 51.8. The 200 mg QD response was 46.2%, with a 95% confidence interval from 36.1 to 56.4. The intervals overlap, but overlap between separate arm intervals is not itself a formal test of the difference; the direct comparison intervals and reported tests address that contrast.

For the registry’s reported comparisons, the estimated difference for 100 mg QD versus placebo was 16.7 percentage points, with a 95% confidence interval from 3.5 to 29.9. For 200 mg QD versus placebo, the estimated difference was 20.6 percentage points, with a 95% confidence interval from 7.3 to 33.9. These intervals express uncertainty in the group contrasts according to the Cochran-Mantel-Haenszel analyses. The unadjusted recalculated intervals are different because they arise from simple comparisons of posted summary statistics.

In general, a narrower confidence interval indicates greater precision under the calculation’s assumptions, while a wider one indicates more uncertainty about the estimate. Precision depends on the amount of information and the variability in the data, among other features. The registry reports evaluable participant counts of 94 for placebo, 89 for 100 mg QD, and 93 for 200 mg QD for the primary endpoint. These counts help contextualize the estimates, but the intervals should be read using the analysis method attached to each result.

A confidence interval does not capture every source of uncertainty. It does not account automatically for uncertainty about study conduct, measurement choices, generalizability, or unreported analysis decisions. Nor should the interval be read as a prediction interval for a future study. The primary comparisons show estimated positive differences with intervals that remain above zero, while the interval widths still indicate that the exact magnitude is not determined precisely.

12. Planning a Similar Trial: Sample Size

This is a planning illustration, not a re-evaluation of the original trial. It asks: if a new study wanted to detect a difference like the one observed, or a smaller one, how large would it need to be? It is deliberately not “observed power” of the finished trial, which is not a meaningful quantity.

Effect to detectParticipants per arm, 80% powerParticipants per arm, 90% power
100% of the observed effect118157
75% of the observed effect203271
50% of the observed effect439587
Sample size needed versus the size of the effect to detect
Sample size needed versus size of effect to detect1002005001,00040%60%80%100%80% power90% powersize of effect to detect, as % of the effect observed (log vertical scale: participants per arm)
Method and assumptions. Two-sided α = 0.05, 1:1 allocation, pooled-variance normal approximation for two proportions. Counts were reconstructed from the posted percentages and arm sizes, so small rounding differences are possible. Calculated for the comparison: PF-04965842 100mg QD.

The sample-size illustrations are planning calculations based on the observed effects, not the trial’s original design. For binary outcomes, the figures are participants per arm, not total enrollment. They assume a two-sided significance level of 0.05, equal allocation between the two arms, and a normal approximation. Each planning scenario uses the stated fraction of the observed effect as the effect to detect.

The 80% power column gives the estimated participants per arm for a hypothetical study to have an 80% chance of detecting the specified effect under those assumptions if that effect is present. The 90% power column gives the corresponding per-arm estimate for a 90% chance. These are planning targets, not observed results from the completed trial. The sample-size illustrations are not observed power.

For the primary endpoint’s 100 mg QD comparison, planning for 100% of the observed effect gives 118 participants per arm for 80% power and 157 for 90% power. Planning for 75% of the observed effect gives 203 and 271 participants per arm, respectively; planning for 50% gives 439 and 587. For the 200 mg QD comparison, the corresponding figures are 75 and 100 for 100% of the observed effect, 129 and 172 for 75%, and 277 and 370 for 50%.

The pattern reflects a general planning principle: smaller effects are harder to distinguish from random variation, so they require more participants to reach a given power target under the same assumptions. These calculations use the observed effect as their starting point, which can be an uncertain basis for planning. The registry record does not report the trial’s original sample-size justification or the assumptions used in its design.

13. How the Sample Size Is Derived

Power is the probability that a study of a given size rejects the null hypothesis when a specific true effect exists. It depends on four things: the effect to detect, the variability of the outcome, the significance level (here a two-sided α of 0.05, so z1−α/2 = 1.960) and the desired power (z1−β = 0.842 for 80% and 1.282 for 90%).

Formula

n = [ z1−α/2 √(2p̄(1−p̄)) + z1−β √(p0(1−p0) + p1(1−p1)) ]2 / (p1 − p0)2

n is the number of participants in each arm, p0 and p1 are the control and treatment proportions, and p̄ is their average.

Worked calculation for this trial

  1. Control proportion p0 = 0.245; treatment proportion p1 = 0.416; average p̄ = 0.330.
  2. First term: z1−α/2 × √[2p̄(1−p̄)] = 1.96 × 0.6651 = 1.3035.
  3. Second term: z1−β × √[p0(1−p0) + p1(1−p1)] = 0.842 × 0.6540 = 0.5504.
  4. n = (1.3035 + 0.5504)2 / (0.1710)2 = 117.5, rounded up to 118 participants per arm for 80% power.

The smaller-effect rows in the table above repeat the same calculation with the effect multiplied by 0.75 and 0.5 (for ratios, applied to the logarithm of the ratio).

R code

alpha <- 0.05
z_a   <- qnorm(1 - alpha / 2)          # two-sided
p0 <- 0.24468085106383                          # control proportion
p1 <- 0.415730337078652                          # treatment proportion
n_per_arm <- function(power, frac = 1) {
  q1 <- p0 + (p1 - p0) * frac               # smaller effect = fraction of the observed difference
  pbar <- (p0 + q1) / 2
  z_b <- qnorm(power)
  ceiling(round((z_a * sqrt(2 * pbar * (1 - pbar)) + z_b * sqrt(p0 * (1 - p0) + q1 * (1 - q1)))^2 / (q1 - p0)^2, 6))
}
for (f in c(1, 0.75, 0.5))
  cat(sprintf("%3.0f%% of observed effect: n per arm = %s (80%% power), %s (90%% power)\n", 100 * f,
              format(n_per_arm(0.80, f), big.mark = ","), format(n_per_arm(0.90, f), big.mark = ",")))

# Check against R's built-in function (unrounded n per arm)
cat("power.prop.test:", round(power.prop.test(p1 = p0, p2 = p1, power = 0.80)$n, 1), "\n")

# Simulation: how often does the z-test reject at the 80%-power sample size?
set.seed(3796676)
n    <- n_per_arm(0.80)
reps <- 20000
x0 <- rbinom(reps, n, p0); x1 <- rbinom(reps, n, p1)
ph <- (x0 + x1) / (2 * n)
z  <- ((x1 - x0) / n) / sqrt(ph * (1 - ph) * 2 / n)
cat(sprintf("Simulated power at n = %s per arm: %.3f (%d replicates)\n", format(n, big.mark = ","), mean(abs(z) > z_a, na.rm = TRUE), reps))

Output from running the code

100% of observed effect: n per arm = 118 (80% power), 157 (90% power)
 75% of observed effect: n per arm = 203 (80% power), 271 (90% power)
 50% of observed effect: n per arm = 439 (80% power), 587 (90% power)
power.prop.test: 117.5 
Simulated power at n = 118 per arm: 0.803 (20000 replicates)

The simulation draws many pairs of event counts at the planned sample size and counts how often the two-proportion z-test rejects the null. It should land close to the target power; at very small required sample sizes it can fall below it, because the normal approximation is rough there.

14. Analyses Reported by the Sponsor

MethodEstimate95% CIP-value
Cochran-Mantel-HaenszelEstimate of difference 16.73.5 to 29.90.015
Cochran-Mantel-HaenszelEstimate of difference 20.67.3 to 33.90.003

The registry’s own primary analyses compare each active-dose group with placebo using the Cochran-Mantel-Haenszel method. The reported estimated difference is 16.7 percentage points for 100 mg QD versus placebo, with a 95% confidence interval from 3.5 to 29.9 and p = 0.015. For 200 mg QD versus placebo, the estimate is 20.6 percentage points, with a 95% confidence interval from 7.3 to 33.9 and p = 0.003.

The unadjusted recalculations use the posted arm-level response summaries and produce risk differences of 0.171 and 0.218, respectively. Their intervals and p-values are also calculated from those simple comparisons. Because the registry’s reported method and the unadjusted recalculations are not identical, small differences in estimates or p-values are expected and do not mean one set has been copied incorrectly. No discrepancy is flagged for this result.

The sponsor’s reported analysis is the trial’s recorded analysis and should be used as the primary reference when describing the trial results. The recalculations offer a transparent, unadjusted way to inspect the arm-level data; they do not replace the reported analysis or reveal unreported model details. The registry record does not describe the stratification details behind the Cochran-Mantel-Haenszel analysis.

15. Multiplicity, Missing Data and Analysis Populations

The primary endpoint is distinguished from the many secondary outcomes listed in the registry. That distinction matters because a study can test more than one hypothesis. General statistical principle: when many comparisons are examined, the probability of seeing at least one result that appears notable by chance can increase unless the analysis plan addresses multiplicity. A prespecified hierarchy, adjustment procedure, or other strategy can help define how evidence should be interpreted across outcomes.

The registry record does not report whether multiplicity was controlled, how testing across the two active-dose comparisons was handled, or whether secondary outcomes followed a prespecified hierarchy. It also does not report interim analyses or the complete statistical analysis plan. The absence of these details in the registry record does not establish that no such procedures existed; it means they cannot be described from the record.

The primary endpoint population included participants randomly assigned to study intervention who took at least one dose. The reported analyzed count refers to participants evaluable at that time point. Withdrawals were counted as nonresponders. These are the stated population and withdrawal rules. The registry record does not report further missing-data procedures, such as additional imputation methods or sensitivity analyses. The effect of unreported missing-data handling cannot be assessed from the posted information alone.

The original sample-size justification is also not reported in the registry record. The planning illustrations based on observed effects are separate from the trial’s own design rationale. They cannot establish what effect the trial was originally powered to detect or what assumptions informed its enrollment target. Together, the missing analysis-plan and design details mean that the registry results can be described as posted, but the full prespecified inferential framework cannot be reconstructed from the record.

16. Safety Results

The registry reports serious adverse events as affected participants divided by participants at risk.

ArmParticipants with serious adverse eventsParticipants at riskPercentage
Placebo2962.1%
PF-04965842 100mg QD0950.0%
PF-04965842 200mg QD1941.1%
Participants with at least one serious adverse event
Serious adverse events by armPlacebo2.1%PF-04965842 100mg QD0.0%PF-04965842 200mg QD1.1%% of participants with at least one serious adverse event

Deaths

ArmDeaths (participants affected of at risk)
Placebo0 of 96
PF-04965842 100mg QD0 of 95
PF-04965842 200mg QD0 of 94

Other (non-serious) adverse events

Participants with at least one non-serious event at or above the registry's 2% reporting threshold.

ArmParticipants affected of at risk
Placebo42 of 96
PF-04965842 100mg QD40 of 95
PF-04965842 200mg QD50 of 94

Most frequent serious adverse event terms

Event termOrgan systemPlaceboPF-04965842 100mg QDPF-04965842 200mg QD
AnxietyPsychiatric disorders0 of 960 of 951 of 94
AngioedemaSkin and subcutaneous tissue disorders1 of 960 of 950 of 94
Dermatitis stopicSkin and subcutaneous tissue disorders1 of 960 of 950 of 94

Most frequent non-serious adverse event terms

Event termOrgan systemPlaceboPF-04965842 100mg QDPF-04965842 200mg QD
Upper respiratory tract infectionInfections and infestations10 of 969 of 9510 of 94
NasopharyngitisInfections and infestations9 of 968 of 958 of 94
NauseaGastrointestinal disorders1 of 967 of 9517 of 94
HeadacheNervous system disorders7 of 965 of 958 of 94
PharyngitisInfections and infestations3 of 965 of 953 of 94
FolliculitisInfections and infestations1 of 967 of 952 of 94
AcneSkin and subcutaneous tissue disorders1 of 963 of 955 of 94
VomitingGastrointestinal disorders0 of 964 of 955 of 94
Blood creatine phosphokinase increasedInvestigations0 of 964 of 954 of 94
PyrexiaGeneral disorders4 of 963 of 951 of 94

Serious events with the highest arm-level rate: anxiety (1.1%), angioedema (1.0%), dermatitis stopic (1.0%).

Do not overextend the safety comparison. Serious-adverse-event counts are safety observations, not efficacy outcomes, and should not be combined with the primary result into a single benefit-risk number.

The safety summary reports serious adverse events among participants at risk in each group. In the placebo group, 2 of 96 participants were reported with a serious adverse event; in the 100 mg QD group, 0 of 95; and in the 200 mg QD group, 1 of 94. Deaths were reported as 0 in each group. These counts describe the registry’s posted serious adverse event figures over the study’s reporting period, which is not further specified in the registry record presented.

The record also lists serious adverse event terms with their posted percentages: Anxiety, 1.1%; Angioedema, 1.0%; and Dermatitis stopic, 1.0%. The last term is reproduced as recorded. These terms and percentages should be read as reported categories, not as a complete description of all possible safety outcomes.

Serious adverse event counts are not a complete safety assessment. The groups have different numbers at risk, and the counts alone do not establish a causal relationship or quantify all potential harms. The registry also lists other adverse event counts, but the serious-event summary does not substitute for a detailed comparison of event types, timing, severity, or relatedness. No medical conclusion should be drawn from these figures alone.

17. What the Result Does, and Does Not, Mean

The primary result is a comparison of Week 12 response proportions using a specific IGA definition. The posted percentages were higher in both PF-04965842 groups than in the placebo group. The registry’s own analyses report positive estimated differences for both comparisons, with 95% confidence intervals above zero. The result therefore describes the trial’s recorded evidence for this endpoint and these treatment groups.

It does not mean that every participant in an active group achieved the response, or that every participant in the placebo group did not. It does not describe the full distribution of individual improvement, because the endpoint classifies participants according to whether they crossed a threshold. It also does not establish an effect for every outcome, time point, or population. The primary endpoint is limited to the Week 12 IGA response in adolescents meeting the study’s eligibility description.

The estimates are not exact values known without uncertainty. Their confidence intervals show a range of differences compatible with the data and analysis method, while the trial’s sample and endpoint rules constrain what can be inferred. The primary results also should not be extended automatically to longer-term effects or to settings not described in the registry record. The record does not provide enough detail to reconstruct the full original statistical plan, including the original sample-size justification or multiplicity procedures.

The safety counts are descriptive and should be interpreted separately from the efficacy endpoint. Serious adverse events and deaths are reported, but those counts alone do not settle the overall safety profile. The posted results are one source of evidence about this study; they do not constitute individualized guidance or a general conclusion about treatment for people outside the trial.

18. Why This Trial Matters Statistically

This trial illustrates why statistical interpretation should begin with the endpoint definition. “Response” is not a generic label: the primary outcome requires a Week 12 IGA category of clear or almost clear plus at least a 2-point improvement from baseline. Reading that definition makes clear what the percentages do and do not summarize.

It also shows the value of separating an arm-level percentage, an estimated group difference, and the uncertainty around that difference. The observed proportions describe the groups, the contrast quantifies their separation, and the confidence interval conveys precision under the analysis method. A p-value adds a test against a null hypothesis but does not replace the estimate or its interval.

The comparison between the registry’s Cochran-Mantel-Haenszel analyses and simple unadjusted recalculations is another practical lesson. Similar results can be expressed through different methods, and the method matters when reporting the trial’s official result. Recalculation can help readers understand the posted summaries, but it should not be presented as though it were the trial’s own prespecified analysis.

Finally, the registry identifies numerous secondary outcomes while leaving the multiplicity strategy and original design justification unreported. That makes it important to distinguish the primary finding from the broader set of secondary findings and to avoid treating every nominal result as equally confirmatory. The study is therefore a useful example of reading a clinical result in context: define the population and endpoint, identify the analysis, evaluate precision, and recognize what the registry does not document.

19. Limitations

The primary endpoint depends on a thresholded global assessment. That makes the response percentage easy to state, but it omits detail about the amount and pattern of change among participants who did not meet the response criteria. The registry record also does not provide the distribution of baseline IGA scores or further detail on how the assessment was administered beyond the scale description.

The analysis population is defined as participants randomly assigned who took at least one dose, while the analyzed count refers to those evaluable at the time point. Withdrawals counted as nonresponders. The registry record does not report additional missing-data procedures or sensitivity analyses, so the robustness of the result to alternative missing-data assumptions cannot be assessed from the record.

The registry reports Cochran-Mantel-Haenszel comparisons but does not give the stratification details. It also does not report a complete statistical analysis plan, multiplicity procedures, interim-analysis information, or the original sample-size justification. These omissions limit reconstruction of the planned inferential approach and how the multiple outcome comparisons were intended to be interpreted.

The result applies to the study’s adolescent population and the specified Week 12 endpoint; the registry record does not establish how the estimates would apply outside that context. The background medicated topical therapy is part of the study question, but its details are not reported in the registry record presented. The registry’s safety summary gives serious-event counts and selected terms, not a comprehensive account of event timing, severity, relatedness, or longer-term safety. These limitations do not erase the posted findings, but they narrow the claims that can be made from them.

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23. Record Summary

NCT03796676 is a completed phase 3 randomized, double-blind, placebo-controlled, multicenter, parallel-group study sponsored by Pfizer. It enrolled 287 adolescents 12 to <18 years of age with moderate-to-severe atopic dermatitis. The active groups received PF-04965842 100 mg QD or 200 mg QD with background medicated topical therapy; the comparator was placebo with the same stated background-treatment context.

The primary endpoint was the percentage achieving clear or almost clear on the IGA and at least a 2-point improvement from baseline at Week 12. The registry reports Cochran-Mantel-Haenszel superiority comparisons against placebo, with positive estimated differences for both active-dose groups. Withdrawals counted as nonresponders. Serious adverse event counts were 2 of 96 for placebo, 0 of 95 for 100 mg QD, and 1 of 94 for 200 mg QD; deaths were 0 in all groups.

The registry record does not report the original sample-size justification, full statistical analysis plan, multiplicity procedure, or additional missing-data methods. Those gaps limit reconstruction of the planned analysis framework and should inform interpretation of secondary results and planning illustrations.

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