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Dental Pain Phase 2 Continuous Endpoint NCT00954356

Safety and Efficacy Study of XPF-001 to Treat Pain Following Wisdom Tooth Extraction: Complete Statistical Analysis

This analysis concerns a randomized, placebo-controlled study of XPF-001 for pain following wisdom tooth extraction. It focuses on the registry’s six-hour total pain relief outcome, its reported group estimates and confidence intervals, and the limits of what can be concluded from the record.

Trial start: 2009-09  ·  Enrollment: 61  ·  Sponsor: Xenon Pharmaceuticals Inc.
Scope of this record

This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record. Numerical trial results on this page are restricted to the results posted in the ClinicalTrials.gov record; calculations added by Clinical Biostats are labelled as such.

1. Trial at a Glance

This page covers the registry results for Safety and Efficacy Study of XPF-001 to Treat Pain Following Wisdom Tooth Extraction (NCT00954356), a randomized phase 2 study. The primary outcome is Total Pain Relief at 6 Hours Post Dose (TOTPAR 6).

61
Enrollment
Phase 2
2
Arms
In the primary outcome
n/a
Effect
No re-analysis shown
n/a
95% CI
See limitations
FeatureRegistry value
ClinicalTrials.gov identifierNCT00954356
PhasePhase 2
ConditionDental Pain
AllocationRandomized
Design modelParallel
MaskingQuadruple
Enrollment61
Arms in the primary outcome2
Lead sponsorXenon Pharmaceuticals Inc.
Results postedYes

2. Clinical Question

Population

People with pain related to third-molar or wisdom tooth extraction were the population of interest. The registry identifies dental pain as the condition and describes the study as a trial of pain following extraction. It does not report further eligibility details in the record.

Intervention

The intervention was XPF-001, given as a single oral dose according to the official study title. The record does not describe the dose amount or the specific treatment schedule beyond that single-dose description.

Comparator

The comparator was placebo. Participants were assigned in a randomized, parallel-group study, with the registry reporting 41 participants in the XPF-001 arm and 20 in the placebo arm.

Primary question

The primary question was whether total pain relief over the 6 hours following dosing differed between XPF-001 and placebo. The primary outcome was TOTPAR 6, reported as a least-squares mean with a 95% confidence interval for each arm.

The endpoint captures pain-relief ratings collected during the period after dosing, rather than a rating at one moment alone. Its score incorporates both the relief ratings and the time over which they were observed. Higher scores indicate more reported pain relief on this measure. The registry describes the trial as proof-of-concept and lists efficacy and safety among its aims. It does not report a formal between-arm effect estimate or a test of the primary comparison. The group estimates can therefore be described, but they should not be mistaken for a reported comparative analysis.

3. Trial Design

This was a Phase 2, single-center, randomized, double-blind, placebo-controlled, parallel-group study. The registry reports quadruple masking, without further detail in the record about which roles were masked. Its official title describes evaluation of the safety, pharmacokinetics and efficacy of a single oral dose of XPF-001 for pain related to third-molar or wisdom tooth extraction.

The registry reports enrollment of 61 participants. The outcome results list 41 participants for XPF-001 and 20 for placebo. Randomization was used, but the method for generating the allocation sequence and the allocation-concealment procedures are not reported in the registry record. The record also does not describe the drug dose, adherence, rescue medication, or other details that could help interpret treatment exposure.

The study began in 2009-09 and had primary completion in 2009-11; its status is completed. The record describes its primary efficacy measure as total pain relief at 6 hours after dosing. It also lists secondary measures of pain relief and pain intensity at other post-dose times, along with time to first perceptible relief. The registry does not report the details of the statistical model used for the primary outcome or how the primary comparison was tested. Its enrollment and the arm-specific estimates describe the posted record, but they do not establish how many participants contributed usable data to every analysis.

4. Participant Flow and Accounting

The registry reports how participants moved through each stage of the study. All counts below are exactly as posted; missing counts are not inferred from other stages.

Overall Study

StageXPF-001Placebo
STARTED4120
COMPLETED4120
NOT COMPLETED00

Analysis population for the primary outcome, as defined in the registry: Published data from an impacted wisdom tooth removal was used to determine a 60 subject study with 2:1 randomisation and a one-sided significance level of 0.10 would have a power of 84.1%. LOCF was used for imputed values and all subjects were included in both the IIT and PP populations for analysis.

5. Baseline Characteristics

The table reproduces the baseline characteristics posted in the registry, which describe the participants analysed at baseline and help show whether the randomized groups were comparable.

CharacteristicUnitXPF-001PlaceboTotal
Participants analysed412061
Age, Categorical: <=18 yearsParticipants000
Age, Categorical: Between 18 and 65 yearsParticipants412061
Age, Categorical: >=65 yearsParticipants000
Age Continuousyears20.2 (SD 2.94)20.9 (SD 3.01)20.4 (SD 2.96)
Sex: Female, Male: FemaleParticipants000
Sex: Female, Male: MaleParticipants412061
Region of Enrollment: United Statesparticipants412061

6. Primary Endpoint

The registry lists the primary outcome as Total Pain Relief at 6 Hours Post Dose (TOTPAR 6), measured over 6 hours post dose.

ElementRegistry entry
Result typeLeast Squares Mean
Measure of spread95% Confidence Interval
Unitunits on a scale
Endpoint classificationContinuous Endpoint

The primary endpoint, TOTPAR 6, summarizes pain relief during the 6 hours after dosing. Participants rated relief at multiple timepoints using a five-point categorical scale ranging from no relief to complete relief. TOTPAR 6 combines those ratings across time using an area calculation; the registry says it was calculated with Simpson’s trapezoidal rule. The possible score ranges from 0 to 24, and higher values represent more reported pain relief.

A measure accumulated over time can reflect both the degree of relief and how long that relief is observed. This differs from relying only on one rating at one timepoint, which could miss changes during the observation period. The registry identifies the endpoint as the primary efficacy variable and reports least-squares means with 95% confidence intervals. It does not give a between-arm difference with its own confidence interval or a comparative p-value.

The group results are XPF-001, 4.37 (95% confidence interval 2.79 to 5.96), and placebo, 2.45 (95% confidence interval 0.182 to 4.72). These estimates describe the reported endpoint for each arm. They should not be read as a direct estimate of the treatment contrast.

7. Why No Re-analysis Is Shown

Reported as posted, not recalculated. Values missing or not estimable for a two-arm comparison (continuous endpoint). A result is recalculated only when the posted data support a clean two-arm comparison, so no result is shown beyond what the sponsor posted.

8. Statistical Interpretation

Clinical Biostats interpretation

The registry reports a TOTPAR 6 least-squares mean of 4.37 for XPF-001, with a 95% confidence interval from 2.79 to 5.96. For placebo, the reported mean is 2.45, with a 95% confidence interval from 0.182 to 4.72. On this endpoint, higher scores indicate more pain relief. The displayed point estimates are therefore descriptively higher in the XPF-001 arm. This observation alone does not establish the size, precision, or statistical significance of a difference between treatments.

A confidence interval describes uncertainty around an estimate, under the assumptions used to construct it. The intervals are for the arm-specific least-squares means. They are not a confidence interval for the difference between arms. A direct comparison would ordinarily report a contrast, its uncertainty, and the method used to test the comparison. Those comparative results are not reported in the registry record. The arm-specific intervals also overlap, but their overlap is not a substitute for a formal comparison and cannot determine whether a treatment contrast is statistically distinguishable from no difference.

The registry lists 41 participants in the XPF-001 outcome arm and 20 in the placebo outcome arm. The estimates should be interpreted in the context of those arm sizes and the missing statistical detail. The record does not identify the model underlying the least-squares means, the covariates in that model, the standard-error method, or whether any adjustments were made. Without those details, it is not possible to reconstruct the sponsor’s comparison or assess how the reported means were estimated.

The study was described as proof-of-concept. Its posted result is therefore best read as a record of arm-level estimates on a specified outcome, not as a complete account of the evidence for a treatment effect. The registry lists secondary measures, but the number of posted analyses is 0. It does not report comparative results for the primary endpoint in the analysis fields. This distinction matters: observed group values can be described, while claims about a treatment effect require an appropriately reported comparison and its uncertainty.

The primary outcome is bounded by the scale’s stated minimum and maximum, and it is assembled from repeated categorical ratings. Those features may matter to the choice and assumptions of an analysis. The record does not report diagnostics or model checks, so it is not possible to judge how well the analysis addressed the outcome’s scale or distribution. The confidence intervals communicate some uncertainty in each arm’s estimate, but not all uncertainty relevant to the treatment comparison.

The registry describes a planning calculation based on published data and states a planned 84.1% power under its specified assumptions. That is a design-stage statement, not evidence that the observed comparison had that power or that the treatment effect was established. No calculation of observed power is needed to interpret the posted arm estimates. The record’s main statistical limitation is the absence of a reported comparative estimate and inferential test for the primary outcome.

9. Statistical Methods Explained

The primary outcome is continuous: each participant’s TOTPAR 6 is a numerical score. The registry reports a least-squares mean for each treatment arm. A least-squares mean is a model-based estimate of a group mean; it may account for features of a statistical model. The record does not say what model was used, what terms it included, or whether the values were adjusted. It is therefore safest to retain the registry’s label rather than infer how the estimates were calculated.

What does the endpoint summarize?

Pain relief was rated at multiple timepoints on a five-point categorical scale. The registry describes the ratings as 0 for no relief, 1 for a little relief, 2 for some relief, 3 for a lot of relief, and 4 for complete relief. TOTPAR 6 combines relief ratings over the 6 hours after dosing into an area calculation using Simpson’s trapezoidal rule. In general, an area-under-the-curve measure reflects the pattern of measurements across time, not just a single observation. Here, the registry states that the higher the score, the more pain relief was obtained.

The endpoint’s scale has a stated minimum of 0 and maximum of 24. This helps define the range of possible results, but does not by itself describe the distribution of observed participant scores. The registry does not report individual-level scores, a standard deviation, or other information on the spread of scores within each arm.

How should the confidence intervals be read?

The 95% confidence intervals are reported around the arm-specific least-squares means. In general, a confidence interval expresses the statistical uncertainty associated with an estimate under the analysis assumptions. It is not a range guaranteed to contain the true value, and it does not indicate the probability that a particular treatment is better. The intervals concern separate group means. A confidence interval for the contrast between groups would directly describe uncertainty in the comparison; that result is not reported in the registry record.

The registry reports XPF-001 at 4.37, with an interval from 2.79 to 5.96, and placebo at 2.45, with an interval from 0.182 to 4.72. The intervals overlap. In general, overlap or non-overlap of separate group intervals is not a replacement for testing the difference between groups. The uncertainty in a contrast depends on the analysis and cannot be recovered merely by comparing the two intervals.

What is missing from the statistical description?

The record does not report the statistical model, the treatment contrast, the standard error for that contrast, a p-value, or a detailed analysis plan. It also does not state whether the primary comparison was adjusted for baseline measures or other covariates. Without these details, an independent reader cannot reproduce the comparative analysis or verify the assumptions used to obtain the reported least-squares means and intervals.

In general, assumptions matter because they determine how estimates and uncertainty are calculated. For a continuous measure, analysts consider the outcome’s distribution, the model’s fit, and whether the uncertainty calculation is appropriate. If observations are more variable than a model assumes, for example, uncertainty can be understated. This is a general statistical point, not a finding about this trial: the registry does not report diagnostics that would establish whether over-dispersion or other model concerns occurred.

What can planning calculations tell us?

The primary outcome description says published data from wisdom tooth removal were used to plan a 60-subject study with 2:1 randomization and a one-sided significance level of 0.10, and that the calculation yielded 84.1% power. This is a stated planning assumption and result, not an observed result. It does not show that the trial’s observed estimates have a particular probability of detecting an effect, nor does it establish that a treatment difference exists. The registry’s actual enrollment is 61, and the outcome results list 41 participants in the XPF-001 arm and 20 in placebo.

Separately, planning illustrations based on observed effects use two-sided significance level 0.05, equal allocation, and a normal approximation. Such illustrations are hypothetical designs for future studies, with the effect to detect defined as a fraction of the observed effect. They are not results from this trial and do not represent observed power. They should be interpreted as planning scenarios, not as evidence about the reliability of the trial’s treatment comparison.

10. Multiplicity, Missing Data and Analysis Populations

The registry lists 11 secondary outcomes, including total pain relief at several post-dose times, summed pain intensity difference at several times, and time to first perceptible relief. The primary endpoint is TOTPAR 6. The record identifies 12 outcome measures overall. Testing or interpreting many outcomes can raise a multiplicity issue: when many comparisons are considered, the chance of a seemingly notable result arising by chance can increase. This is a general statistical concern, not a claim that a particular result in this study is spurious.

The registry record does not report a multiplicity adjustment or a prespecified hierarchy for interpreting secondary outcomes. It also reports 0 analyses in the analysis listing. Consequently, the record does not provide enough information to assess which comparisons were formally tested, whether all planned outcomes were reported, or how any multiple-testing concerns were handled.

The primary outcome description states that last observation carried forward (LOCF) was used for imputed values and that all subjects were included in both the IIT and PP populations for analysis. LOCF carries a participant’s last observed value forward to fill a later missing value. In general, this approach can be misleading if the unobserved outcome would have changed over time, so the handling and amount of missing data matter. The registry does not report how many values were missing, why they were missing, or sensitivity analyses using other assumptions.

The record uses the terms IIT and PP but does not define them in detail or report population-specific results. It says all subjects were included in both populations, but does not explain how that statement was applied to each endpoint. These gaps limit assessment of the analysis populations and the robustness of the reported estimates.

11. Safety Results

The registry reports serious adverse events as affected participants divided by participants at risk.

ArmParticipants with serious adverse eventsParticipants at riskPercentage
XPF-0010410.0%
Placebo0200.0%

Other (non-serious) adverse events

Participants with at least one non-serious event at or above the registry's 5% reporting threshold.

ArmParticipants affected of at risk
XPF-00116 of 41
Placebo4 of 20

Most frequent non-serious adverse event terms

Event termOrgan systemXPF-001Placebo
NauseaGastrointestinal disorders8 of 412 of 20
DizzinessNervous system disorders7 of 410 of 20
HeadacheNervous system disorders4 of 411 of 20
SomnolenceNervous system disorders3 of 411 of 20
Confusional StatePsychiatric disorders3 of 410 of 20
Neutrophil count increasedInvestigations0 of 411 of 20
White blood cell count increasedInvestigations0 of 411 of 20
Do not overextend the safety comparison. Serious-adverse-event counts are safety observations, not efficacy outcomes, and should not be combined with the primary result into a single benefit-risk number.

The registry reports 0 serious adverse events among the 41 participants at risk in the XPF-001 arm and 0 among the 20 participants at risk in the placebo arm. These are the serious-event counts recorded for the listed groups. They do not show that no adverse events of any kind occurred, and they do not provide a comparative statistical analysis of safety.

The record also lists other adverse events affecting 16 participants in the XPF-001 group and 4 in the placebo group. Those are separate from the serious adverse event figures and should not be conflated with them. The registry does not provide detailed event descriptions in the listed serious-event terms, which are empty. Death counts are not reported in the registry record.

Zero recorded serious adverse events in the groups is a description of the posted safety data. It is not proof that the risk of serious events is absent, and the record does not report enough detail to characterize event timing, severity beyond the serious classification, or relatedness to treatment.

12. What the Result Does, and Does Not, Mean

The posted results show arm-specific estimates for the primary pain-relief measure. The XPF-001 least-squares mean is 4.37, and the placebo least-squares mean is 2.45. The registry states that higher TOTPAR 6 scores indicate more pain relief. These values describe the observed estimates for the two arms; they are not themselves an estimate of the difference between treatments.

The 95% confidence intervals provide information about uncertainty in each arm’s mean. They do not provide the uncertainty around a treatment contrast. The registry record does not report that contrast, a p-value for the primary comparison, or enough statistical detail to reconstruct them. It is therefore not possible to determine from the posted results alone whether the between-arm difference was statistically distinguishable from no difference, or how precisely such a difference was estimated.

The study is described as a Phase 2 proof-of-concept trial, and the registry identifies a randomized, placebo-controlled design. Those features describe the study’s purpose and structure. They do not remove the limitations of incomplete comparative reporting. Nor do the group estimates, on their own, establish how results would apply outside the people and setting studied. The registry identifies the trial as single-center and does not report further information on eligibility or participant characteristics in the record.

The safety entries report no serious adverse events in either arm as recorded, while other adverse events are listed separately. The absence of recorded serious events in these groups should not be read as proof of no serious-event risk. Overall, the registry supports a descriptive account of arm-level results and safety counts. It does not contain the comparative statistical results needed to make a precise claim about the treatment effect.

13. Why This Trial Matters Statistically

This study illustrates why a randomized design and a reported treatment comparison are both important for statistical interpretation. Random assignment supports a structured comparison between groups, but the analysis still needs to report the contrast of interest and its uncertainty. Here, the registry gives arm-specific least-squares means and confidence intervals for TOTPAR 6, while a comparative estimate and inferential test are not reported in the registry record.

The endpoint also illustrates how a clinical measure can summarize repeated observations. TOTPAR 6 combines pain-relief ratings across time into one measure, allowing the outcome to represent the course of relief during the post-dose period rather than a single rating. Understanding its construction helps clarify what the score means, but does not resolve the missing details about the statistical model or treatment contrast.

The record distinguishes a planning calculation from observed trial results. It describes a design-stage power calculation based on published data, while the reported group means are estimates from the trial. Planning power does not substitute for a confidence interval or test of the observed treatment comparison. Likewise, hypothetical sample-size illustrations are planning tools, not evidence that a treatment effect has been demonstrated.

Finally, the record lists multiple secondary measures, but does not report their analyses or explain how multiplicity was handled. This makes it difficult to assess the breadth of the reported evidence. These features make the trial statistically informative as an example of how endpoint definitions, missing-data methods, planning assumptions, and transparent comparative reporting all shape interpretation.

14. Limitations

The most important limitation for interpreting efficacy is that the registry reports arm-specific primary outcome estimates but no comparative treatment estimate or inferential test. It does not give a confidence interval for the difference, a p-value, or the details of the model underlying the least-squares means. As a result, the precision of the treatment contrast cannot be assessed from the registry record.

The record does not describe the allocation sequence, concealment procedures, masking roles, participant eligibility criteria, or baseline characteristics. Although the study is identified as randomized, quadruple-masked, and single-center, those labels do not supply the omitted procedural and population details. The actual administered dose and other treatment-exposure details are also not reported in the registry record.

The primary outcome description states that LOCF was used, but the amount and pattern of missing data are not reported. There is no reported sensitivity analysis to show how alternative assumptions about missing outcomes might affect the results. The registry’s statement about IIT and PP populations is not accompanied by definitions or separate population-specific results.

The registry lists secondary outcomes but reports 0 analyses. It does not explain multiplicity handling or identify a hierarchy for interpreting those outcomes. For safety, serious-event counts are listed as zero in the two groups, but deaths are not reported in the registry record and event details are limited. These reporting gaps constrain assessment of both efficacy and safety; they do not establish that unreported events or analyses did not occur.

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18. Record Summary

NCT00954356 is a completed Phase 2, single-center, randomized, double-blind, placebo-controlled, parallel-group study of a single oral dose of XPF-001 for pain after wisdom tooth extraction. The registry reports enrollment of 61 and lists 41 participants in the XPF-001 outcome group and 20 in placebo.

The primary endpoint was TOTPAR 6, a time-based summary of pain-relief ratings during the 6 hours after dosing. The reported least-squares means are 4.37 for XPF-001 and 2.45 for placebo, with arm-specific 95% confidence intervals of 2.79 to 5.96 and 0.182 to 4.72, respectively. A comparative estimate and test are not reported in the registry record.

The record describes LOCF for imputed values and reports no serious adverse events in either listed group. It does not report death counts, detailed comparative analyses, or the statistical model used for the primary endpoint.

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