← Clinical Trials
Lymphangioleiomyomatosis Phase 1 Safety Study NCT01687179

SAIL: Complete Statistical Analysis of Sirolimus and Hydroxychloroquine in Lymphangioleiomyomatosis

An educational statistical analysis of the phase 1 SAIL study evaluating the safety of combination therapy with sirolimus and hydroxychloroquine in women with lymphangioleiomyomatosis, with sequential evaluation of hydroxychloroquine 200 mg and 400 mg.

Study period: September 2012 – August 2015  ·  Enrollment: 14  ·  Status: Completed
Scope of this record

This page separates reported trial results from statistical interpretation. The ClinicalTrials.gov record reports that results were posted for the primary safety endpoint, but no formal statistical analyses were posted to ClinicalTrials.gov.

Registry note: This page provides an independent statistical analysis and educational interpretation of publicly reported results. ClinicalTrials.gov provides the official trial registry record.

1. Trial at a Glance

SAIL was a phase 1, sequential, unmasked treatment study of sirolimus and hydroxychloroquine in women with lymphangioleiomyomatosis. The registry describes one treatment arm and two hydroxychloroquine dose levels: 200 mg and 400 mg.

14
Enrollment
Women with LAM
1
Study Arm
Sequential design
48
Safety Window
Weeks
2015-08
Primary Completion
Study completion period
FeatureSAIL
PhasePhase 1
ConditionLymphangioleiomyomatosis
Design modelSequential
MaskingNone
Primary purposeTreatment
Enrollment14
Number of arms1
InterventionsSirolimus and hydroxychloroquine 200 mg; sirolimus and hydroxychloroquine 400 mg
Lead sponsorBrigham and Women's Hospital
Sponsor typeOther
StatusCompleted
ClinicalTrials.govNCT01687179

2. Clinical Question

The central question was whether combination therapy with sirolimus and hydroxychloroquine could be administered safely in patients with lymphangioleiomyomatosis over the registry-defined 48-week assessment period.

Population

Women with lymphangioleiomyomatosis. The total enrollment was 14.

Intervention

Combination therapy with sirolimus and hydroxychloroquine, evaluated at hydroxychloroquine doses of 200 mg and 400 mg.

Comparator

The registry does not identify a separate comparator arm. It records one study arm in a sequential design.

Primary question

What adverse events and serious adverse events occurred during combination therapy over 48 weeks?

3. Trial Design

01
Enroll14 participants
02
Sequential studyOne registered arm
03
200 mgHydroxychloroquine dose
04
400 mgHydroxychloroquine dose
05
48 weeksSafety assessment
Design model
Sequential. The registry identifies the study as sequential rather than randomized parallel-group.
Masking
None. The study was not masked.
Primary purpose
Treatment. The registry classifies the primary purpose as treatment.
Study duration
September 2012 to August 2015. The registry lists 2012-09 as the start date and 2015-08 as the primary completion date.

Sequential dose evaluation

The combination was evaluated with hydroxychloroquine at two dose levels, 200 mg and 400 mg. Because the registry identifies the design as sequential and the number of arms as 1, these dose levels should not be interpreted as two independently randomized treatment groups.

That distinction is important statistically. In a randomized parallel-group comparison, differences between arms can be interpreted within the framework created by random allocation. A sequential dose study has a different purpose: safety observations accumulate as participants are evaluated under the study's sequence. The registry does not report a randomized control group.

4. Endpoints

EndpointRegistry definitionTime frame
Safety of Combination Therapy With Sirolimus and Hydroxychloroquine in LAM Patients Safety was assessed based on the adverse events and serious adverse events that occurred in these patients when they were on this combination therapy. Percentage of adverse events in each system at a dose was calculated from the total adverse events at that dose. Subjects were closely monitored and adverse events were classified and graded according to the Common Terminology Criteria for Adverse Events (CTCAE) Version 4.0. 48 weeks

The endpoint is therefore fundamentally a safety endpoint rather than a comparative efficacy endpoint. The registry's description emphasizes both the occurrence of adverse events and serious adverse events and the classification of adverse events by system and dose.

5. Analysis Population and Dose-Level Interpretation

The registry reports total enrollment of 14 and one registered study arm. The serious-adverse-event information is reported separately for the two hydroxychloroquine dose levels.

Safety group reported by the registrySerious adverse events affectedAt risk
Sirolimus and hydroxychloroquine 200 mg03
Sirolimus and hydroxychloroquine 400 mg110
Denominator caution: the registry reports enrollment of 14, while the serious-adverse-event denominators shown for the two dose levels are 3 and 10. Those denominators total 13, so the registry information shown here does not establish how the remaining enrolled participant relates to these particular safety denominators. The 0/3 and 1/10 figures should therefore be reported exactly as registry-reported safety counts rather than treated as a complete accounting of all 14 enrolled participants.

6. Statistical Methodology

Descriptive safety analysis

The primary endpoint is a safety assessment based on adverse events and serious adverse events. For an endpoint of this type, the principal statistical task is descriptive: count events, classify them according to the prespecified terminology, and summarize their occurrence within the relevant treatment or dose group.

Registry-described calculation
Percentage of adverse events in each system at a dose = adverse events in the system / total adverse events at that dose

The registry explicitly describes calculating the percentage of adverse events in each system at a dose from the total adverse events at that dose.

CTCAE classification and grading

The registry states that adverse events were classified and graded according to the Common Terminology Criteria for Adverse Events, Version 4.0. This provides a standardized framework for describing the severity and clinical category of adverse events rather than reducing safety to a single overall event count.

Serious adverse events

Serious adverse events are presented as affected participants divided by participants at risk for each reported dose level. The registry reports 0/3 for the 200 mg group and 1/10 for the 400 mg group.

No formal inferential analysis posted

The registry reports that results were posted for the primary safety endpoint, but it does not contain posted statistical analyses. Consequently, the available results are descriptive safety counts rather than estimates accompanied by formal confidence intervals or hypothesis tests.

Statistical perspective: for a phase 1 safety study with a small enrollment and no randomized comparator arm, descriptive event summaries are particularly important. Formal hypothesis testing would not by itself establish whether a safety event pattern is clinically acceptable, and small denominators can produce highly unstable percentage estimates.

7. Planned Analysis

The registry defines the primary endpoint as the safety of combination therapy with sirolimus and hydroxychloroquine in LAM patients over 48 weeks. Safety is assessed through adverse events and serious adverse events occurring while patients are on combination therapy.

The registry further specifies that adverse events are classified and graded according to CTCAE Version 4.0 and that the percentage of adverse events in each system at a dose is calculated from the total adverse events at that dose.

Statistical componentHow the endpoint is typically evaluated
Adverse-event occurrenceCount participants or events experiencing adverse events during the defined safety period.
Serious adverse eventsSummarize the number of affected participants and the number at risk within the relevant safety group.
System-level adverse eventsClassify events by the relevant body-system category and describe their frequency within the dose level.
SeverityUse the CTCAE grading framework specified by the registry.
Dose-level descriptionDescribe safety findings separately for the 200 mg and 400 mg hydroxychloroquine dose levels rather than treating the sequential study as a randomized comparison.
Registry result status: results have been posted on ClinicalTrials.gov, but no formal statistical analyses are posted there. The available numerical safety information should therefore be read as descriptive reporting rather than as a hypothesis test or model-based treatment-effect estimate.

8. Posted Safety Results

The registry reports serious adverse events by the two dose levels used in the sequential study. These are the principal numerical safety results available in the record.

Serious adverse events at 200 mg

0 / 3

Sirolimus and hydroxychloroquine 200 mg: 0 affected participants among 3 at risk.

Serious adverse events at 400 mg

1 / 10

Sirolimus and hydroxychloroquine 400 mg: 1 affected participant among 10 at risk.

Dose levelAffected / at riskDescriptive reading
200 mg0 / 3No serious adverse event was reported among the 3 participants at risk in this registry safety summary.
400 mg1 / 10One serious adverse event was reported among the 10 participants at risk in this registry safety summary.
Clinical Biostats interpretation

The 0/3 result means that no affected participant was reported among the 3 participants at risk in the registry's 200 mg safety summary. It does not establish that the treatment has zero risk of serious adverse events. With only 3 participants in the denominator, an observed count of zero provides very limited information about the underlying event rate.

The 1/10 result means that one affected participant was reported among 10 participants at risk in the registry's 400 mg safety summary. It does not establish that the higher dose caused that event, nor does it establish that the event rate at 400 mg is higher than at 200 mg.

There is no randomized comparison here, and the dose groups arise within a sequential design. The two observed counts therefore should not be interpreted as an estimate of a causal dose-response relationship.

No confidence interval or p-value was posted for these safety results. A confidence interval would describe statistical uncertainty around an estimated event probability; a p-value would address a specified hypothesis. Neither would substitute for clinical review of the individual adverse events and their CTCAE classifications.

9. Why a Zero Count Is Not the Same as Zero Risk

A particularly important statistical lesson from the 200 mg safety result is that an observed zero is a statement about the observed sample, not proof that the underlying probability is zero.

Observed versus underlying risk
Observed event proportion = observed events / participants at risk

When no event is observed, the observed proportion is zero. Statistical uncertainty remains because only a small number of participants were observed.

For the 200 mg group, the registry reports 0 events among 3 participants at risk. If the underlying serious-adverse-event probability were nonzero, it would still be possible to observe zero events in a sample of this size. The absence of an observed event therefore should not be converted into a claim of established safety.

The same principle applies to the 400 mg result. One event among 10 participants provides direct evidence that a serious adverse event occurred in the observed safety population, but it does not by itself identify the cause of that event or establish a stable population-level event probability.

10. Comparing the Two Dose Levels Carefully

The presence of two dose-level safety summaries naturally invites comparison, but the design determines what such a comparison can legitimately show.

What can be described

The registry reports 0/3 serious adverse events at 200 mg and 1/10 at 400 mg. These are descriptive observations within the reported safety groups.

What cannot be established from these counts

The counts alone do not establish that the 400 mg dose has a higher serious-adverse-event risk or that the observed event was caused by the dose.

Why design matters

The study is registered as sequential with one arm, rather than as a randomized comparison between two independent treatment groups.

Why sample size matters

The reported denominators are 3 and 10. Such small safety populations produce substantial uncertainty around any underlying event-rate estimate.

For a randomized trial, a between-group safety comparison can be anchored to random allocation. In this study, the sequential design changes the interpretation: the dose levels are part of the study sequence rather than two randomized arms.

11. Statistical Methods Explained

Why is this primarily a descriptive analysis?

Safety endpoints in an early-phase study are commonly summarized by counts, frequencies, severity categories, and clinically meaningful event classifications. The SAIL registry specifically describes calculating percentages of adverse events within systems at each dose and grading events with CTCAE Version 4.0. Those are descriptive rather than model-based procedures.

What does 0/3 mean?

It means that zero participants were reported as affected by a serious adverse event among the 3 participants at risk in the 200 mg safety summary. It does not mean that the probability of a serious adverse event is zero.

What does 1/10 mean?

It means that one participant was reported as affected by a serious adverse event among the 10 participants at risk in the 400 mg safety summary. The count is an observed safety finding, not a causal estimate.

Why shouldn't 0/3 and 1/10 be treated as a formal dose comparison?

The registry identifies the study as sequential and records one arm. Without random allocation between dose groups, the difference in observed event counts cannot be attributed to hydroxychloroquine dose alone. Sequence, participant characteristics, exposure, and other factors could also matter.

Why does CTCAE grading matter?

A raw count of adverse events does not convey the severity or clinical category of an event. CTCAE Version 4.0 provides the standardized classification and grading framework specified by the registry, allowing safety findings to be described in a consistent clinical vocabulary.

Why are confidence intervals useful even when no formal analysis is posted?

Confidence intervals can communicate the uncertainty associated with an estimated event probability. In a very small safety study, the interval can be wide, reinforcing the point that an observed proportion is not necessarily a precise estimate of the underlying population risk. The registry does not post confidence intervals for the reported serious-adverse-event counts.

12. Interpreting the 48-Week Safety Endpoint

The registry specifies a 48-week time frame for the primary safety endpoint. This time frame defines the period over which adverse events and serious adverse events are assessed for the primary endpoint.

Time frame is an important part of a safety estimand. A statement such as "no serious adverse events were observed" has meaning only when the population, exposure period, and event definition are specified. Here, the registry identifies combination therapy, the LAM population, CTCAE-based classification, and a 48-week time frame.

ElementRegistry specification
PopulationLAM patients
ExposureCombination therapy with sirolimus and hydroxychloroquine
Safety eventsAdverse events and serious adverse events
ClassificationCTCAE Version 4.0
Time frame48 weeks
Dose-level reporting200 mg and 400 mg hydroxychloroquine

13. Serious Adverse Events and Denominators

Safety statistics are highly dependent on their denominators. The registry's serious-adverse-event field gives both the number affected and the number at risk, which is preferable to reporting only an event count.

Reported serious adverse events
200 mg
0 / 3
400 mg
1 / 10

The visual difference should not be mistaken for a statistically established dose effect. The denominators are small, the study is sequential, and the registry does not provide an inferential comparison between the two dose levels.

Denominator discipline: the registry's "at risk" counts should be preserved when describing the serious-adverse-event results. They should not be silently replaced with the total enrollment of 14.

14. What the Registry Does and Does Not Establish

QuestionWhat the registry establishes
Was the study completed?Yes. The status is listed as completed.
Was it phase 1?Yes.
Was there a randomized comparator arm?The registry lists one arm and a sequential design; it does not identify a separate comparator arm.
Was masking used?No.
What was the primary endpoint?Safety of combination therapy with sirolimus and hydroxychloroquine in LAM patients over 48 weeks.
How were adverse events classified?According to CTCAE Version 4.0.
Were results posted?Yes.
Were formal statistical analyses posted?No.
What serious adverse-event counts are reported?0/3 at 200 mg and 1/10 at 400 mg.

15. Limitations

16. Why This Trial Matters Statistically

SAIL is a useful teaching case because it illustrates a different statistical problem from the large randomized efficacy trials that dominate clinical-trial reporting. Here, the central task is not estimating a treatment hazard ratio or comparing survival curves. It is understanding how safety evidence should be summarized when the study is small, sequential, unmasked, and without a randomized comparator.

ConceptHow it appears in SAIL
Phase 1 designThe study is classified as phase 1.
Sequential designThe registry identifies a sequential design with one arm.
Safety endpointThe primary endpoint evaluates adverse events and serious adverse events over 48 weeks.
Descriptive statisticsThe registry describes calculating percentages of adverse events by system at a dose.
Standardized adverse-event terminologyEvents were classified and graded according to CTCAE Version 4.0.
Small denominatorsSerious-adverse-event summaries use 3 and 10 participants at risk.
Zero-event interpretation0/3 illustrates why absence of observed events is not proof of zero underlying risk.
Non-randomized dose interpretationDifferences between sequential dose levels should not be interpreted as randomized treatment effects.

17. Safety Evidence: Counts, Rates, and Causality

Three different questions are often conflated in safety reporting: Did an event occur?, How frequently did it occur?, and Was it caused by the treatment? The SAIL registry's serious-adverse-event field directly addresses the first question and supplies the denominator needed for a descriptive frequency calculation. It does not, from these counts alone, answer the causality question.

This distinction is particularly important in a single-arm study. Without a concurrent comparator group, an observed adverse event cannot readily be separated into treatment-associated risk versus the background occurrence of events in the underlying patient population.

Event occurrence

One serious adverse event is reported among 10 participants at risk at the 400 mg dose.

Event frequency

The registry supplies affected and at-risk counts, allowing the safety observation to be expressed descriptively.

Causality

The numerical count alone does not establish that an event was caused by hydroxychloroquine, sirolimus, or their combination.

Comparative safety

A randomized comparator is not identified in the registry design, so a conventional randomized safety contrast is not available.

18. Statistical Interpretation of Small Safety Studies

Early-phase safety studies are often intentionally small because their objectives differ from those of confirmatory efficacy trials. The statistical consequence is that estimates of uncommon event probabilities are inherently imprecise.

For example, observing no serious adverse events among 3 participants is compatible with many possible underlying risks. The sample simply contains too few observations to distinguish a very low probability from a materially larger probability with confidence. Similarly, one event among 10 participants provides a direct observation of an event but remains a very uncertain basis for estimating a stable population rate.

Statistical interpretation

The appropriate emphasis is therefore on what was observed, among whom, at which dose level, and over what time frame. The counts should not be transformed into stronger claims about population-level safety than the study design and sample size can support.

19. Clinical Interpretation vs Statistical Interpretation

Statistical interpretation

The registry reports descriptive serious-adverse-event counts of 0/3 at 200 mg and 1/10 at 400 mg. No formal statistical analysis was posted, and the dose levels were studied sequentially rather than as randomized comparator groups.

Clinical interpretation

The safety findings should be considered in the context of the observed adverse events, their CTCAE classifications and grades, the treatment exposure, and the small number of participants represented in each reported safety denominator.

20. A Practical Framework for Reading the SAIL Safety Result

StepQuestion to askSAIL application
1What is the endpoint?Safety of combination therapy over 48 weeks.
2What population is being described?LAM patients enrolled in the phase 1 study.
3What is the denominator?The registry reports 3 at risk at 200 mg and 10 at risk at 400 mg for serious adverse events.
4What was observed?0 affected at 200 mg and 1 affected at 400 mg.
5Is there randomization?The registry identifies one arm and a sequential design.
6Is there formal uncertainty reported?No confidence intervals or p-values are posted in the statistical-analysis field.
7What terminology standard was used?CTCAE Version 4.0.

21. Study Timeline

2012-09 · Study start

SAIL begins

The registry lists September 2012 as the study start date.

Sequential treatment · Study design

Two hydroxychloroquine dose levels

The registered intervention includes sirolimus with hydroxychloroquine 200 mg and sirolimus with hydroxychloroquine 400 mg in a sequential, single-arm design.

48 weeks · Primary endpoint

Safety assessment

The primary endpoint evaluates adverse events and serious adverse events during combination therapy over 48 weeks.

2015-08 · Primary completion

Study completion period

The registry lists August 2015 as the primary completion date.

22. What a Strong Safety Analysis Should Report

The SAIL record illustrates why a safety table is more informative when it preserves the structure of the underlying observation. A useful safety analysis identifies the treatment or dose level, number at risk, number affected, event classification, severity, and relevant observation period.

Reporting elementWhy it matters
Dose levelSafety observations are reported separately for 200 mg and 400 mg hydroxychloroquine.
Participants at riskProvides the denominator needed to understand the scale of the observation.
Participants affectedIdentifies how many participants experienced the reported serious adverse event.
Adverse-event systemThe registry specifies system-level percentage calculations for adverse events.
CTCAE classification and gradeProvides standardized clinical characterization of adverse events.
Time framePlaces the safety findings within the 48-week primary endpoint period.

A safety analysis is therefore more than a single percentage. The denominator, event definition, severity framework, exposure, and observation period all affect interpretation.

23. Important Statistical Takeaways

Takeaway 01
0 / 3 ≠ proven zero risk

A zero observed event count in a small sample does not establish that the underlying event probability is zero.

Takeaway 02
1 / 10 ≠ causal dose effect

An observed event among 10 participants does not establish that the dose caused the event or that its risk is higher than at another dose.

Takeaway 03
Sequential design ≠ randomized comparison

The registered sequential, single-arm structure limits direct causal comparison between the two dose-level safety summaries.

24. Sources

Continue through the Clinical Biostats knowledge graph

Clinical trial statistics become easier to interpret when study design, endpoints, denominators, uncertainty, and analysis populations are considered together.

25. Record Summary

SAIL provides a compact example of how statistical reasoning changes when the primary objective is safety in an early-phase, sequential study rather than confirmatory efficacy in a randomized trial. The registry describes a phase 1 study with one arm, no masking, 14 enrolled participants, and two hydroxychloroquine dose levels used with sirolimus. The primary endpoint is safety over 48 weeks, assessed through adverse events and serious adverse events with CTCAE Version 4.0 classification and grading.

The posted serious-adverse-event results are 0/3 at 200 mg and 1/10 at 400 mg. Those observations are useful descriptive safety information, but their small denominators and sequential design place clear limits on comparative inference. In particular, the absence of an observed event in 3 participants is not evidence of zero underlying risk, and the single event among 10 participants does not by itself establish a causal dose effect.

The statistical lesson is straightforward but important: safety counts must be interpreted through their denominators, study design, event definitions, severity classifications, and observation period. For SAIL, those elements are more informative than a formal p-value would be, especially because no formal statistical analyses were posted to the registry.

Clinical Biostats methodology: The most useful interpretation of a small phase 1 safety study preserves the distinction between observed events and underlying risk, between sequential dose evaluation and randomized comparison, and between descriptive safety reporting and formal inferential analysis.