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Population Design and the Population Fisher Matrix · Tutorial 78 of 497

Information About Fixed Effects

Learn how typical-value parameters enter the population Fisher information, when covariance sensitivity contributes, and how to calculate and interpret the resulting information for a sampling design.

Advanced 12 min read

What You'll Learn

  • Derive the fixed-effect block of the Gaussian population Fisher information.
  • Distinguish holding covariance parameters fixed from treating the covariance matrix as locally constant in typical-value parameters.
  • Calculate information from mean and covariance sensitivities.
  • Interpret information contributions in the context of a sampling design.
  • Diagnose weak identification and common errors in fixed-effect information calculations.

Why Isolate Information About Typical Values?

In a population model, a design is informative about typical values when the observations change predictably as those values change. In a nonlinear mixed-effects model, the observed data also vary because of random effects and residual error. The Gaussian population approximation summarizes those sources of variation in a subject-level mean and covariance. The fixed-effect information asks how precisely the typical-value parameters can be estimated from that approximate distribution, with the population covariance and residual-error parameters treated as known.

This qualification matters. Holding the parameters that define random-effect and residual variability fixed does not always make the resulting subject-level covariance matrix constant as a typical value changes. For example, the first-order approximation to the population covariance can depend on typical values through individual sensitivities. The information then has both a mean-sensitivity contribution and a covariance-sensitivity contribution. If the covariance matrix itself is frozen locally, only the mean contribution remains.

Definition: For subject \(i\), let \(Y_i\) be the vector of observations under that subject’s design. Under the Gaussian population approximation, write \(Y_i\sim N(m_i(\theta),V_i(\theta))\), where \(\theta\) is the vector of typical-value parameters, \(m_i\) is the approximate population mean, and \(V_i\) is the approximate population covariance. The fixed-effect information is the Fisher information for \(\theta\), evaluated with the population covariance and residual-error parameters held fixed.

Assume subjects are independent, each \(V_i\) is positive definite, and the mean and covariance are differentiable in \(\theta\). The approximation is used at a specified parameter value, so all derivatives and matrices below are evaluated there. These assumptions make the Gaussian likelihood well-defined and permit the usual expected Fisher information calculation. The result is local: it describes information near the parameter value used to evaluate the model.

Deriving the Fixed-Effect Information

For one subject, suppress the subject index and write \(r=Y-m(\theta)\). The Gaussian log likelihood, omitting constants that do not depend on \(\theta\), is

$$ \ell(\theta)=-\frac{1}{2}\log |V(\theta)|-\frac{1}{2}r^\mathsf{T}V(\theta)^{-1}r. $$

For component \(\theta_a\), define \(m_a=\partial m/\partial\theta_a\) and \(V_a=\partial V/\partial\theta_a\). Differentiating the log determinant and inverse covariance gives the score component

$$ \frac{\partial\ell}{\partial\theta_a} =m_a^\mathsf{T}V^{-1}r +\frac{1}{2}r^\mathsf{T}V^{-1}V_aV^{-1}r -\frac{1}{2}\operatorname{tr}(V^{-1}V_a). $$

The first term records how the mean changes with \(\theta_a\). The last two terms record how the covariance changes. Under the model, \(E(r)=0\) and \(E(rr^\mathsf{T})=V\). For a multivariate normal residual, the expected products of the linear and centered quadratic terms are zero, and the covariance of the centered quadratic terms yields the trace expression below. Thus the expected Fisher information between components \(\theta_a\) and \(\theta_b\) is

$$ \mathcal I_{ab} =m_a^\mathsf{T}V^{-1}m_b +\frac{1}{2}\operatorname{tr}\!\left(V^{-1}V_aV^{-1}V_b\right). $$

Applying this result to each independent subject and summing gives the fixed-effect information matrix:

$$ \mathcal I_{\theta\theta} =\sum_i\left[ J_i^\mathsf{T}V_i^{-1}J_i +\frac{1}{2} \begin{pmatrix} \operatorname{tr}(V_i^{-1}V_{i,1}V_i^{-1}V_{i,1}) & \cdots \\ \vdots & \ddots \end{pmatrix} \right], $$

where \(J_i=\partial m_i/\partial\theta^\mathsf{T}\) is the mean sensitivity matrix, and \(V_{i,a}=\partial V_i/\partial\theta_a\). In the matrix above, the entry for components \(a,b\) in the covariance term is \(\frac{1}{2}\operatorname{tr}(V_i^{-1}V_{i,a}V_i^{-1}V_{i,b})\). This notation makes explicit that each subject contributes information under their own sampling design.

A useful special case arises when \(V_i\) is treated as locally constant with respect to \(\theta\). Then \(V_{i,a}=0\) for every component, and

$$ \mathcal I_{\theta\theta} =\sum_i J_i^\mathsf{T}V_i^{-1}J_i. $$

This is the mean-only fixed-effect information. It is also the appropriate expression for a Gaussian model whose covariance is parameter-independent in the fixed effects. It should not be confused with the full fixed-effect block when \(V_i(\theta)\) changes with typical values, even if the parameters defining random-effect and residual variability are held fixed.

Worked Example: Mean Information With Fixed Covariance

Suppose one hypothetical subject has two observations with mean vector \(m(\theta)=(\theta,2\theta)^\mathsf{T}\) and fixed covariance \(V=\operatorname{diag}(4,1)\). Here \(\theta\) is a typical value measured in concentration units, and the observations are in concentration units. Calculate the subject’s information for \(\theta\).

The mean sensitivity is \(J=(1,2)^\mathsf{T}\). The covariance is constant in \(\theta\), so there is no covariance-sensitivity term. Therefore,

$$ \mathcal I_{\theta\theta} =J^\mathsf{T}V^{-1}J =(1,2) \begin{pmatrix} 1/4 & 0\\ 0 & 1 \end{pmatrix} \begin{pmatrix} 1\\2 \end{pmatrix} =\frac{1}{4}+4=4.25. $$

The information is \(4.25\) per squared concentration unit of \(\theta\). The second observation contributes \(4\) information units because its mean changes twice as fast with \(\theta\) and its variance is smaller. This comparison is conditional on the stated covariance model; it does not imply that the second observation is always more useful under other error or sampling conditions.

When Typical Values Also Change the Covariance

In a population approximation, the covariance may depend on the typical values even when the random-effect covariance and residual-error parameters are held fixed. A local change in a typical value can change the individual sensitivities that map random effects to observations. The covariance contribution then reflects information carried by changes in the distribution’s spread or correlation, not just by changes in its mean.

Worked Example: Covariance Sensitivity Adds Information

Consider a hypothetical scalar observation \(Y\sim N(m(\theta),v(\theta))\), evaluated at \(\theta=1\), with \(m(\theta)=\theta\) and \(v(\theta)=1+\theta^2\). Treat the variance-generating parameters as fixed; the variance depends on \(\theta\) through the stated model. Calculate the local Fisher information.

At \(\theta=1\), \(m=1\), \(m'=1\), \(v=2\), and \(v'=2\). For a scalar normal model, the information is

$$ \mathcal I_{\theta\theta} =\frac{(m')^2}{v}+\frac{1}{2}\left(\frac{v'}{v}\right)^2 =\frac{1^2}{2}+\frac{1}{2}\left(\frac{2}{2}\right)^2 =0.5+0.5=1.00. $$

The mean contributes \(0.5\) information units per squared unit of \(\theta\), and the covariance contributes another \(0.5\). If one instead froze \(v\) locally, the result would be \(0.5\), not \(1.00\). That distinction is why “variance parameters are held fixed” should not be silently replaced by “the covariance has zero derivative with respect to every typical value.”

The covariance term is positive semidefinite as a matrix, although individual off-diagonal entries can be positive or negative. It adds information when changes in the covariance distinguish nearby parameter values. It does not mean that greater variability automatically improves estimation: the mean term is weighted by \(V_i^{-1}\), so larger observational variability can reduce information from mean changes.

Worked Example: Information for Two Typical Values

For one hypothetical subject, suppose the approximate mean is \(m(\alpha,\beta)=(\alpha,\alpha+2\beta)^\mathsf{T}\) and the fixed covariance is \(V=\operatorname{diag}(1,4)\). The parameters \(\alpha\) and \(\beta\) are both expressed in the response units. Find the subject’s information matrix.

The sensitivity matrix and inverse covariance are

$$ J= \begin{pmatrix} 1&0\\ 1&2 \end{pmatrix}, \qquad V^{-1}= \begin{pmatrix} 1&0\\ 0&1/4 \end{pmatrix}. $$

Since \(V\) is fixed, use \(J^\mathsf{T}V^{-1}J\):

$$ \mathcal I_{\theta\theta} = \begin{pmatrix} 1&1\\ 0&2 \end{pmatrix} \begin{pmatrix} 1&0\\ 0&1/4 \end{pmatrix} \begin{pmatrix} 1&0\\ 1&2 \end{pmatrix} = \begin{pmatrix} 1.25&0.50\\ 0.50&1.00 \end{pmatrix}. $$

The diagonal entries are the information for each parameter when considered in the joint model; the off-diagonal entry reflects that the two parameters affect the mean in partly overlapping ways. The determinant is \(1.25(1.00)-(0.50)^2=1.00\), so the matrix is nonsingular: this local design separates the two mean directions. The inverse information, if this model and regular large-sample approximation are suitable, is the covariance approximation for the estimated parameter vector. Its units follow the corresponding parameter units.

Design Interpretation, Diagnostics, and Limits

For fixed covariance, each subject contributes \(J_i^\mathsf{T}V_i^{-1}J_i\). A design is useful for typical values when its observation times, doses, or other design choices create sensitivities that are both sufficiently large and sufficiently distinct across parameters. If two columns of the sensitivity matrix are nearly proportional after accounting for \(V_i^{-1}\), the corresponding parameters may be difficult to distinguish. Increasing the number of independent subjects with the same design adds their information matrices, but it does not repair a structural inability of that design to separate parameter effects.

Several checks help identify a calculation or design that is going wrong:

  • Check the covariance: each \(V_i\) must be symmetric positive definite for the inverse and Gaussian likelihood to be valid. A singular or nearly singular matrix may signal redundant observations or numerical instability.
  • Check derivatives: compare analytic sensitivities with finite differences at the evaluation point. Poor scaling or a coding error can produce implausibly small, large, or discontinuous information.
  • Check the matrix: expected Fisher information should be symmetric and positive semidefinite, apart from small numerical rounding errors. A materially negative eigenvalue suggests an implementation or approximation problem.
  • Check identifiability: a very small eigenvalue, large condition number, or nearly singular information matrix indicates a weakly informed parameter combination, even when individual diagonal entries look substantial.
  • Check the covariance dependence: determine whether \(V_i\) changes with \(\theta\) in the chosen approximation. Omitting \(V_{i,a}\) is justified only for a mean-only calculation or when those derivatives are zero by model structure.

The alternatives answer different questions. The mean-only expression is simpler and may be appropriate when covariance is fixed in the fixed effects or when deliberately assessing mean sensitivity alone. The full Gaussian fixed-effect block also uses covariance sensitivity. A likelihood-based analysis can instead use the original nonlinear mixed-effects likelihood, without relying on the Gaussian population approximation, but may require substantially more computation and is not the same local information calculation. The Gaussian approximation is most useful as a design tool when it adequately represents the subject-level distribution near the parameter values of interest.

Information is local and model-dependent. It does not guarantee unbiased estimates, adequate finite-sample precision, or robustness to misspecification. The approximation can be poor when nonlinearities are strong over the random-effect distribution, the subject-level distribution is far from Gaussian, or the design produces weakly identified parameters. Also, this fixed-effect calculation conditions on covariance and residual-error parameters as known. Estimating those parameters jointly can affect fixed-effect precision; accounting for that impact requires the joint information and nuisance-parameter analysis.

Common pitfall: “The random-effect covariance and residual-error parameters are fixed, so the covariance contribution to typical-value information is zero.” This is not generally valid. Those parameters can be held fixed while \(V_i(\theta)\) still changes with \(\theta\). First differentiate the actual approximate covariance with respect to each typical value; include the trace term when those derivatives are nonzero. Use \(J_i^\mathsf{T}V_i^{-1}J_i\) alone only when the covariance is locally constant in the typical values or when the intended calculation is explicitly mean-only.
Key takeaway: With covariance and residual-error parameters held fixed, the fixed-effect information is determined by how typical values change the Gaussian population mean and, when applicable, the approximate covariance. State whether the calculation includes covariance sensitivity before interpreting the result.

Check Your Understanding

Answer each question, then compare with the solutions below.

  1. For a scalar Gaussian observation with mean \(m(\theta)\) and variance \(v(\theta)\), write the fixed-effect information. What term disappears if \(v\) is locally constant in \(\theta\)?
  2. A subject has two independent observations with fixed variances \(1\) and \(9\), and mean sensitivities \(2\) and \(3\) to a scalar parameter. Calculate the subject’s information.
  3. Why can holding random-effect and residual-error parameters fixed still leave a nonzero covariance-sensitivity contribution?
  4. What does a nearly singular fixed-effect information matrix suggest, and does adding more subjects with the identical design necessarily resolve it?

Solutions. (1) The information is \((m')^2/v+\frac{1}{2}(v'/v)^2\). If \(v\) is locally constant, \(v'=0\), so the covariance term disappears. (2) The inverse variances are \(1\) and \(1/9\), so the information is \(2^2(1)+3^2(1/9)=4+1=5\) per squared parameter unit. (3) The approximate observation covariance can depend on typical values through model sensitivities even when the parameters defining random-effect and residual variability do not change. (4) It suggests at least one weakly informed parameter combination. Replication adds information in the same directions but does not necessarily resolve structural confounding; a different design may be needed to distinguish the parameters.

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