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Phase 1/2 Designs With Efficacy and Toxicity · Tutorial 633 of 799

Escalation Boundaries From Joint Outcome Probabilities

You will learn how joint outcome probabilities define transparent dose-transition boundaries, and how to calculate and interpret those boundaries for small cohorts.

Advanced 10 min read

What You'll Learn

  • Represent efficacy and toxicity jointly with four outcome probabilities at each dose.
  • Derive escalation, retention, and de-escalation regions from prespecified clinical thresholds.
  • Update joint outcome probabilities with a Dirichlet-multinomial model and calculate marginal probabilities.
  • Apply the boundaries to hypothetical small-cohort data, including boundary ties.
  • Recognize when probability estimates are too uncertain to support a transition.

Why define boundaries on joint outcomes?

At a dose-finding decision, efficacy and toxicity must be considered together. A dose can produce responses and also produce unacceptable toxicity; counting either outcome alone can obscure that tradeoff. Joint outcome probabilities make the relationship explicit while allowing a design to state its clinical criteria in interpretable terms.

A boundary is a prespecified rule that maps the estimated outcome probabilities at the current dose to an action: escalate to a higher dose, retain the current dose, or de-escalate. There is no single set of numerical boundaries appropriate for every trial. They depend on the clinical thresholds and the decision rule chosen before outcomes are examined. The construction below is one transparent probability-scale rule, not a universal standard.

Definition: At dose \(d\), let \(E=1\) indicate an efficacy outcome and \(T=1\) indicate a toxicity outcome, each defined over prespecified assessment windows. Write \(\theta_{et,d}=P(E=e,T=t\mid d)\), for \(e,t\in\{0,1\}\). Thus, \(\theta_{10,d}\) is the probability of efficacy without toxicity, and \(\theta_{11,d}\) is the probability of both outcomes. The marginal efficacy and toxicity probabilities are \(r_d=\theta_{10,d}+\theta_{11,d}\) and \(q_d=\theta_{01,d}+\theta_{11,d}\), respectively.

The four joint probabilities are nonnegative and sum to one. No independence between efficacy and toxicity is assumed: \(\theta_{11,d}\) is estimated as its own cell probability, not constructed as the product of two marginal probabilities. The rule below uses the marginal probabilities \(r_d\) and \(q_d\), each calculated by summing the relevant joint cells.

Specify the clinical thresholds and derive the regions

Let \(\phi_T\) be the largest acceptable toxicity probability and \(\psi_E\) the minimum efficacy probability considered adequate at the current dose. These cutoffs are clinical design inputs. For a chosen estimate \(\tilde q_d\) of toxicity probability and \(\tilde r_d\) of efficacy probability, define the following rule:

  • De-escalate if \(\tilde q_d>\phi_T\).
  • Escalate if \(\tilde q_d\leq\phi_T\) and \(\tilde r_d<\psi_E\).
  • Retain if \(\tilde q_d\leq\phi_T\) and \(\tilde r_d\geq\psi_E\).

Toxicity takes priority: a dose above the toxicity boundary is not retained or escalated merely because its efficacy estimate is high. On the boundary \(\tilde q_d=\phi_T\), the dose is treated as meeting the toxicity criterion; on \(\tilde r_d=\psi_E\), it meets the efficacy criterion.

$$ \begin{aligned} \text{De-escalate:}\quad &\tilde q_d>\phi_T,\\ \text{Escalate:}\quad &\tilde q_d\leq\phi_T\quad\text{and}\quad \tilde r_d<\psi_E,\\ \text{Retain:}\quad &\tilde q_d\leq\phi_T\quad\text{and}\quad \tilde r_d\geq\psi_E. \end{aligned} $$

These conditions follow directly from the clinical criteria. First, acceptable toxicity requires \(\tilde q_d\leq\phi_T\); violating that inequality gives the de-escalation region. Within the toxicity-acceptable region, efficacy below its minimum gives escalation, while efficacy meeting or exceeding the minimum gives retention. In terms of joint cells, the boundaries are \(\tilde\theta_{01,d}+\tilde\theta_{11,d}=\phi_T\) and \(\tilde\theta_{10,d}+\tilde\theta_{11,d}=\psi_E\). They partition the probability simplex into the three action regions.

Important qualification: These are boundaries for a specified probability-scale rule, not a claim that every dose-finding design should use posterior means or these particular inequalities. The thresholds, estimation method, and treatment of uncertainty must be specified for the trial. Dose limits also apply: escalation is unavailable at the highest dose, and de-escalation is unavailable at the lowest dose. Those cases require a separately prespecified action, such as retaining or stopping.

Estimating the joint probabilities in small cohorts

For a simple illustration, assume that participants treated at dose \(d\) have independent outcomes from the same four-category multinomial distribution, and that each participant has a fully assessed efficacy and toxicity outcome. Let \(n_{et,d}\) be the number in joint category \((E=e,T=t)\), and let \(N_d\) be the total number assessed at that dose. A Dirichlet prior with parameters \(a_{00},a_{10},a_{01},a_{11}\) gives a Dirichlet posterior with parameters \(a_{et}+n_{et,d}\). Its posterior mean for each cell probability is

$$ \tilde\theta_{et,d} = \frac{a_{et}+n_{et,d}} {\sum_{e,t}(a_{et}+n_{et,d})}. $$

For the examples, use the symmetric prior \(a_{et}=1\) in all four cells. It adds one prior count to each category, so the posterior denominator is \(N_d+4\). The estimates used in the boundary rule are then \(\tilde q_d=\tilde\theta_{01,d}+\tilde\theta_{11,d}\) and \(\tilde r_d=\tilde\theta_{10,d}+\tilde\theta_{11,d}\). This small prior avoids zero estimates in an unobserved cell, but it does not make a small cohort informative by itself.

Worked Example: A Dose on Both Boundaries

Suppose six hypothetical participants have these outcomes at the current dose: three have neither outcome, two have efficacy without toxicity, one has toxicity without efficacy, and none have both. Thus \((n_{00},n_{10},n_{01},n_{11})=(3,2,1,0)\). Use the symmetric Dirichlet prior above, \(\phi_T=0.30\), and \(\psi_E=0.40\).

The posterior cell means, in the stated category order, are

$$ (\tilde\theta_{00},\tilde\theta_{10},\tilde\theta_{01},\tilde\theta_{11}) = \left(\frac{4}{10},\frac{3}{10},\frac{2}{10},\frac{1}{10}\right) =(0.400,0.300,0.200,0.100). $$

Therefore, \(\tilde q=0.200+0.100=0.300\) and \(\tilde r=0.300+0.100=0.400\). Both estimates are exactly on their boundaries. The toxicity inequality is \(\tilde q\leq0.30\), and the efficacy inequality is \(\tilde r\geq0.40\), so the rule says retain. A different tie convention could change the action, which is why boundary equality must be settled in advance.

Worked Example: Escalate When Toxicity Is Acceptable but Efficacy Is Low

In another hypothetical cohort of six participants, suppose the joint counts are \((4,1,1,0)\). With the same prior, thresholds, and category order, the posterior cell means are

$$ (\tilde\theta_{00},\tilde\theta_{10},\tilde\theta_{01},\tilde\theta_{11}) = \left(\frac{5}{10},\frac{2}{10},\frac{2}{10},\frac{1}{10}\right). $$

The toxicity estimate is \(\tilde q=2/10+1/10=0.300\), which meets the toxicity criterion. The efficacy estimate is \(\tilde r=2/10+1/10=0.300\), which is below \(0.400\). Thus the dose is in the escalation region. The calculation uses both joint cells containing toxicity and both containing efficacy; it does not treat efficacy and toxicity as independent.

Worked Example: Toxicity Takes Priority Over Efficacy

For a third hypothetical cohort, let the counts be \((2,1,2,1)\). The posterior cell means are

$$ (\tilde\theta_{00},\tilde\theta_{10},\tilde\theta_{01},\tilde\theta_{11}) = \left(\frac{3}{10},\frac{2}{10},\frac{3}{10},\frac{2}{10}\right). $$

Here \(\tilde q=3/10+2/10=0.500\), above the toxicity boundary. Also, \(\tilde r=2/10+2/10=0.400\), exactly at the efficacy threshold. The first condition takes precedence, so the action is de-escalate, not retain. Meeting the efficacy criterion does not cancel the unacceptable toxicity estimate.

What the boundaries do—and do not—establish

The calculation above gives a clear action for each pair of probability estimates, but it does not establish that those estimates are precise. Posterior means can be close to a threshold even when considerable posterior probability lies on both sides of it. A probability-uncertainty rule could instead require, for example, a prespecified posterior probability of exceeding the toxicity limit before de-escalating, or a prespecified probability of meeting both clinical criteria before retaining. Such rules use posterior tail probabilities rather than only posterior means; their probability cutoffs need clinical justification and design calibration.

The Dirichlet-multinomial illustration assumes a common outcome distribution for participants at a dose and fully observed outcomes. If assessment windows differ, outcomes are delayed, or participants have not completed follow-up, treating unobserved outcomes as absent can distort all four cells. Likewise, a model that imposes dose-response structure can borrow information across doses, but its estimates depend on that structure. The earlier material on joint dose models provides context for model-based estimates; the probability-scale boundaries themselves do not require a particular dose-response model.

The marginal efficacy criterion also needs careful clinical interpretation. In this rule, \(r_d\) counts efficacy whether or not toxicity occurred, while \(q_d\) counts toxicity whether or not efficacy occurred. If the clinical requirement is specifically for efficacy without toxicity, the relevant probability is \(\theta_{10,d}\), and the boundary should be defined on that joint event instead. Substituting one criterion for another after seeing the data changes the decision rule.

A further limitation is that a local boundary does not, by itself, guarantee desirable trial-wide behavior. It does not establish how often the design will recommend an unsafe dose, how many participants will be treated at each dose, or how often it will select an effective dose. Those properties depend on the whole design and should be examined under plausible joint outcome patterns. The present rule is a decision map, not a complete assessment of design performance.

Diagnostics and common pitfalls

  • Check cell totals. Confirm that all four counts refer to the same dose, outcome definitions, and assessment window, and that \(n_{00}+n_{10}+n_{01}+n_{11}=N_d\).
  • Check the marginal sums. Toxicity includes both \((0,1)\) and \((1,1)\); efficacy includes both \((1,0)\) and \((1,1)\). Omitting the both-outcomes cell underestimates both margins.
  • Inspect uncertainty near a boundary. A point estimate just below \(\phi_T\) is not strong evidence that the true toxicity probability is acceptable. With very small cohorts, report or evaluate uncertainty rather than treating a threshold crossing as precise.
  • Do not multiply marginal probabilities. Replacing \(\theta_{11,d}\) by \(q_dr_d\) assumes independence. Efficacy and toxicity may be associated, so estimate or model their joint distribution directly.
  • Respect dose and safety constraints. The local rule cannot authorize a dose outside the permitted range or override a separately prespecified safety action.

A common mistake is to say, “The efficacy estimate is high, so we should stay at this dose,” even when toxicity exceeds its limit. The correction is to apply the toxicity condition first: if \(\tilde q_d>\phi_T\), this rule de-escalates regardless of \(\tilde r_d\). Another mistake is to interpret a boundary crossing as proof that the true probability is on one side. It is an action under a prespecified rule, not certainty about an unknown parameter.

How this rule compares with alternatives

A raw empirical-proportion rule replaces \(\tilde\theta_{et,d}\) with \(n_{et,d}/N_d\). It is easy to calculate but can yield zero or extreme probabilities in a small cohort. The Dirichlet posterior mean used here smooths those estimates, while remaining explicit about all four outcome categories. A posterior-tail rule goes further by basing actions on the probability that a clinical criterion is violated or met; this represents uncertainty more directly but requires choices about posterior probability cutoffs.

The BOIN12 approach uses a different decision construction for joint benefit and toxicity. The probability-scale rule here makes its marginal clinical cutoffs visible and yields simple inequalities, but it does not supply a utility-based ranking of doses or account automatically for uncertainty in its point estimates. These methods should not be treated as interchangeable: the estimand, thresholds, and intended action logic should match the trial’s clinical question.

Check Your Understanding

Answer each question using the boundary rule and conventions stated above.

  1. At a dose, \(\tilde\theta_{00}=0.40\), \(\tilde\theta_{10}=0.20\), \(\tilde\theta_{01}=0.25\), and \(\tilde\theta_{11}=0.15\). With \(\phi_T=0.30\) and \(\psi_E=0.40\), what is the action?
  2. Why does the toxicity probability include \(\theta_{11,d}\)?
  3. For six participants with counts \((2,2,0,2)\), calculate the posterior mean toxicity and efficacy probabilities under the symmetric Dirichlet prior. What action follows for the example thresholds?
  4. What assumption is made if one estimates the probability of both efficacy and toxicity as the product of the marginal probabilities?

Solutions. (1) \(\tilde q=0.25+0.15=0.40\), which exceeds \(0.30\); de-escalate, regardless of efficacy. (2) The \((1,1)\) category represents participants who experienced toxicity, so it is part of the marginal toxicity event. (3) The posterior denominator is \(6+4=10\). The cell means are \((3/10,3/10,1/10,3/10)\), so \(\tilde q=1/10+3/10=0.40\) and \(\tilde r=3/10+3/10=0.60\). Since toxicity exceeds \(0.30\), de-escalate. (4) It assumes efficacy and toxicity are independent at that dose, which need not be true.

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