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Phase 1/2 Designs With Efficacy and Toxicity · Tutorial 646 of 799

Operating Characteristics Of Joint Dose-Finding Designs

Learn how to summarize the repeated-trial behavior of a joint dose-finding design using decision accuracy, patient allocation, and safety and efficacy outcomes.

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What You'll Learn

  • Define a target dose before measuring selection accuracy.
  • Estimate the probability that a design selects that target across simulated trials.
  • Summarize how patients are allocated across doses and how much toxicity occurs.
  • Distinguish overall efficacy from joint outcomes such as efficacy without toxicity.
  • Quantify Monte Carlo uncertainty and recognize misleading summaries.
  • Compare trial-level operating characteristics with posterior summaries from one trial.

Why Operating Characteristics Matter

A joint dose-finding design is a sequence of decisions: it uses accumulating efficacy and toxicity information to assign patients, possibly stop early, and eventually recommend a dose. A model can describe the outcomes expected at each dose, but that description alone does not tell us how the complete design behaves when applied repeatedly. A design may often recommend a suitable dose yet expose many patients to toxicity on the way there; another may limit toxicity but frequently stop without a recommendation. Operating characteristics summarize these repeated-trial consequences under specified assumptions.

The key is to evaluate the whole decision process, not just the model's fit or a final posterior probability. For each hypothetical trial, the prespecified allocation and stopping rules are applied to the outcomes that would arise under a particular data-generating scenario. Repeating this process produces distributions of final recommendations, allocation patterns, and patient outcomes. These summaries describe performance under the chosen scenario; they are not guarantees about an actual trial.

Define the Target and the Trial-Level Summaries

Suppose there are \(J\) ordered doses. For patient \(i\), let \(E_i=1\) indicate efficacy and \(Z_i=1\) indicate toxicity within the protocol-defined assessment windows. The joint outcome is the pair \((E_i,Z_i)\); its probabilities need not be obtained by treating efficacy and toxicity as independent. A dose-finding algorithm assigns patients using accumulating data and produces either a final recommended dose \(\hat d\) or no dose recommendation.

Selection accuracy requires a target defined independently of the algorithm's observed results. One possible clinical target is the dose with greatest efficacy among doses satisfying a toxicity constraint. In the examples below, the target is the dose with the largest true efficacy probability among doses whose true toxicity probability is at most 0.30; ties go to the lower dose. Other clinical objectives can define a different target, but the criterion must be explicit before interpreting accuracy.

Definition: Under a specified data-generating scenario and a fixed design, an operating characteristic is a probability or expectation describing the design's behavior across repeated hypothetical trials. Examples include the probability of recommending the target dose, the expected fraction assigned to each dose, and the expected number of toxicities.

Let \(R\) denote the number of simulated trial replicates. In replicate \(r\), write \(\hat d_r\) for the final recommendation, \(N_{jr}\) for the number of patients assigned to dose \(j\), and \(E_{ir}\) and \(Z_{ir}\) for patient outcomes. If no dose is recommended, the replicate is retained as a no-recommendation outcome; it must not silently disappear from a selection-accuracy denominator.

$$ \widehat{\mathrm{Selection\ accuracy}} = \frac{1}{R}\sum_{r=1}^{R} I(\hat d_r=d^*) $$

Here \(d^*\) is the prespecified target and \(I(\cdot)\) equals 1 when its condition is true and 0 otherwise. This estimates the probability that a trial recommends the target dose. The probability of any recommendation can also be reported separately, as can the recommendation probabilities for each individual dose. Those additional summaries reveal whether apparent inaccuracy is mostly due to wrong-dose recommendations or to stopping without a recommendation.

Allocation is summarized by dose-specific counts or proportions. A trial-level proportion is \(N_{jr}/N_r\), where \(N_r\) is the number of patients actually treated in replicate \(r\). Averaging these proportions describes the average share of treated patients assigned to each dose. If trial sizes vary because of early stopping, also report the distribution of \(N_r\): the average share and the total number of patients answer different questions.

$$ \widehat A_j=\frac{1}{R}\sum_{r=1}^{R}\frac{N_{jr}}{N_r}, \qquad \widehat B_T=\frac{1}{R}\sum_{r=1}^{R}\sum_{i=1}^{N_r}Z_{ir} $$

The first quantity estimates the average allocation proportion at dose \(j\). The second estimates the mean total number of toxicities per trial. A complementary toxicity rate is the total toxicity count divided by the total number treated across replicates. State which summary is used: mean counts emphasize burden per trial, whereas a pooled rate weights trials with more patients more heavily.

Efficacy outcomes can be summarized analogously, but the precise endpoint matters. Report, for example, the mean number of patients with efficacy per trial, or the pooled efficacy proportion. A joint summary such as the probability of efficacy without toxicity, \(P(E=1,Z=0)\), retains information that separate marginal efficacy and toxicity rates cannot provide. If a utility score is used, define its values and interpretation in advance rather than selecting weights after seeing results.

Worked Examples

Worked Example: Estimating Selection Accuracy

Suppose a hypothetical design is evaluated in \(R=200\) simulated trials. Before simulation, the target is defined as the most efficacious dose with toxicity probability no greater than 0.30. The scenario's true rates are:

DoseTrue efficacy probabilityTrue toxicity probability
10.300.08
20.500.18
30.620.35

Dose 3 exceeds the toxicity limit. Doses 1 and 2 satisfy it, and dose 2 has the larger efficacy probability, so \(d^*=2\). Across the 200 replicates, the design recommends dose 2 in 132 trials, dose 1 in 24, dose 3 in 30, and no dose in 14.

The estimated selection accuracy is \(132/200=0.660\), or 66.0%. The probability of any recommendation is \((132+24+30)/200=186/200=0.930\), or 93.0%. Among trials with a recommendation, the fraction selecting dose 2 is \(132/186=0.710\), or 71.0%. This conditional quantity answers a different question from the unconditional accuracy: it excludes the 14 trials with no recommendation. Both can be useful, provided their denominators are clearly stated.

Worked Example: Allocation and Toxicity Burden

In a separate hypothetical evaluation, every replicate treats 30 patients. Averaged across replicates, 6.0 patients receive dose 1, 15.0 receive dose 2, and 9.0 receive dose 3. The scenario's toxicity probabilities at these doses are 0.08, 0.18, and 0.35.

The average allocation proportions are \(6/30=0.200\), \(15/30=0.500\), and \(9/30=0.300\). They sum to 1.00 because each trial treats 30 patients and every patient receives one of the three doses.

Using the scenario's dose-specific toxicity probabilities, the expected number of toxicities per 30-patient trial is \(6(0.08)+15(0.18)+9(0.35)=0.48+2.70+3.15=6.33\). The corresponding expected toxicity proportion is \(6.33/30=0.211\), or 21.1%. This calculation uses expected allocations and assumes the stated probabilities apply to the patients assigned at each dose. In a simulation, the empirical mean toxicity count is calculated directly from generated patient outcomes; it need not equal 6.33 exactly because of simulation variability.

The allocation share at dose 3 matters to interpretation: although the average toxicity rate is below 0.30, the design still exposes 30% of patients to a dose with a scenario toxicity probability of 0.35. A single overall toxicity rate would obscure this pattern.

Worked Example: Summarizing Joint Efficacy and Toxicity

Consider a hypothetical scenario and allocation proportions of 0.20, 0.50, and 0.30 at doses 1, 2, and 3. The joint outcome probabilities are:

Dose\(P(E=1,Z=0)\)\(P(E=1,Z=1)\)\(P(E=0,Z=1)\)\(P(E=0,Z=0)\)
10.240.060.020.68
20.360.140.040.46
30.320.280.070.33

Each row sums to 1. At dose 2, for example, the marginal efficacy probability is \(0.36+0.14=0.50\), and the marginal toxicity probability is \(0.14+0.04=0.18\). The probability of efficacy without toxicity is 0.36.

The allocation-weighted probability of efficacy without toxicity is \(0.20(0.24)+0.50(0.36)+0.30(0.32)=0.048+0.180+0.096=0.324\). Thus, for 30 patients under these fixed allocation proportions, the expected number with efficacy and no toxicity is \(30(0.324)=9.72\). The weighted marginal efficacy probability is \(0.20(0.30)+0.50(0.50)+0.30(0.60)=0.06+0.25+0.18=0.490\), giving an expected 14.7 efficacy outcomes. These are different endpoints: 14.7 includes efficacy with toxicity, while 9.72 does not.

The joint table is necessary for the first calculation. Marginal efficacy and toxicity probabilities alone do not determine \(P(E=1,Z=0)\) unless their dependence is also specified.

Monte Carlo Precision and a Short Justification

Operating characteristics are usually estimated by simulation because adaptive assignments make the distribution of a complete trial difficult to derive directly. If independent simulated replicates each produce an indicator \(I_r=I(\hat d_r=d^*)\), then \(I_r\) is Bernoulli with success probability \(\pi\), the true selection accuracy under the specified scenario and design. The estimator is the sample mean \(\hat\pi=R^{-1}\sum I_r\).

Independence across replicates gives \(\mathrm{Var}(\hat\pi)=\mathrm{Var}(I_r)/R\). Since a Bernoulli variable has variance \(\pi(1-\pi)\), replacing the unknown \(\pi\) by \(\hat\pi\) gives the estimated Monte Carlo standard error:

$$ \widehat{SE}_{MC}(\hat\pi) = \sqrt{\frac{\hat\pi(1-\hat\pi)}{R}} $$

For the first example, this is \(\sqrt{0.660(0.340)/200}=0.0335\), or about 3.35 percentage points. This quantifies simulation error in estimating the scenario-specific selection probability; it does not describe uncertainty about the real-world outcome rates or the model assumptions. For an estimated mean count or rate, use the sample standard deviation of the replicate-level values divided by \(\sqrt R\). Replicate-level calculations are important when outcomes within a trial are related through adaptive decisions.

1
Specify the scenario and target.
Give the true joint outcome distribution at each dose and the clinical rule that defines the target, including what counts as no acceptable dose if that is possible.
2
Apply the complete design in each replicate.
Use its assignment, stopping, and recommendation rules; generate outcomes according to the scenario and record all relevant trial-level quantities.
3
Aggregate with explicit denominators.
Calculate recommendation frequencies, allocation summaries, and efficacy and toxicity outcomes; report Monte Carlo standard errors for estimated characteristics.

Assumptions, Diagnostics, and Alternatives

A simulation estimate describes the design only under the conditions used to generate and analyze its replicates. At minimum, the design rules must be fully specified, the scenario must define the outcomes that can occur at each dose, and the outcome-generation process must represent the relevant dependence between efficacy and toxicity. The simulated trial must also apply the protocol's handling of assessment timing, missing or unevaluable outcomes, and stopping. If these features are omitted or coded differently from the intended design, a precise numerical estimate can still answer the wrong question.

Check that dose allocation counts sum to the number treated, allocation proportions sum to 1 within a complete trial, and joint outcome probabilities are nonnegative and sum to 1 at each dose. Confirm that the target is calculated from the stated criterion, not inferred from which dose the algorithm most often selects. Inspect the full recommendation distribution, the no-recommendation frequency, trial sizes, and dose-specific exposure, rather than relying on one overall score. Large Monte Carlo standard errors, rare recommendations, or substantial variability between replicates signal that a point estimate alone is inadequate.

Operating characteristics should not be confused with posterior summaries from one observed trial. A posterior probability describes uncertainty about model parameters conditional on that trial's data and model; a repeated-trial selection probability describes how often the design makes a specified decision over hypothetical repetitions under a scenario. Neither quantity substitutes for the other. Likewise, a single average can conceal poor performance in an important scenario, so operating characteristics should be interpreted alongside the scenario and endpoint definitions that produced them.

The main limitation is dependence on the assumed scenarios and implementation. Results do not establish performance under unexamined outcome distributions, and a favorable average can mask unsafe allocations or low accuracy in a clinically important case. A broad set of plausible scenarios gives a more informative performance picture than one convenient scenario. Separate patient-level safety, efficacy, and joint outcome summaries are often more interpretable than an arbitrarily weighted composite. If a composite is clinically justified, its weights and decision meaning must be prespecified.

Common Pitfall

A common error is to report the fraction of correct recommendations only among trials that recommended a dose and call it selection accuracy. In the first example, this gives \(132/186=71.0\%\), while the probability of recommending the target among all trials is \(132/200=66.0\%\). Excluding stopped trials can make performance look better by removing a meaningful design outcome. Report unconditional selection accuracy and the probability of no recommendation; give conditional accuracy only as a clearly labelled supplementary summary.

Key takeaway: Operating characteristics are repeated-trial summaries tied to a specified design, target, and data-generating scenario. Report selection, allocation, toxicity, and efficacy together, with clear denominators and an indication of Monte Carlo precision.

Check Your Understanding

Answer each question using the definitions and calculation conventions above.

  1. A design recommends the target dose in 84 of 120 simulated trials and makes no recommendation in 12. What is unconditional selection accuracy, and what is accuracy conditional on a recommendation?
  2. In 40-patient trials, the average dose counts are 8 at dose 1, 20 at dose 2, and 12 at dose 3. What are the allocation proportions?
  3. At a dose, \(P(E=1,Z=0)=0.28\) and \(P(E=1,Z=1)=0.12\). What is the marginal efficacy probability, and what is the efficacy-without-toxicity probability?
  4. Why is a posterior probability that a dose is safe in one trial not the same as the probability the design selects the target dose across simulated trials?

Solutions. (1) Unconditional accuracy is \(84/120=0.700\), or 70.0%. There are \(120-12=108\) trials with a recommendation, so conditional accuracy is \(84/108=0.778\), or 77.8%. (2) The proportions are \(8/40=0.200\), \(20/40=0.500\), and \(12/40=0.300\); they sum to 1. (3) Marginal efficacy is \(0.28+0.12=0.40\). Efficacy without toxicity is the specified joint cell, 0.28. (4) The posterior probability conditions on one trial's data and model, whereas selection accuracy is a repeated-trial probability under a specified scenario and the full adaptive design. They have different conditioning information and answer different questions.

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