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Integrated Sensitivity Analysis of a Growth Hormone Trial

Learn to summarize endpoint availability, specify a pattern-mixture sensitivity model, and assess whether a growth hormone trial’s treatment conclusion persists across plausible assumptions about missing outcomes.

Advanced 12 min read

What You'll Learn

  • Summarize endpoint availability and dropout timing by randomized arm.
  • Define an arm-specific delta adjustment relative to a MAR predictive model.
  • Calculate how missing-outcome assumptions change the all-randomized treatment contrast.
  • Compare sensitivity scenarios using estimates and confidence intervals.
  • Identify diagnostics, limitations, and alternatives to the delta model.

From Dropout Patterns to a Treatment Conclusion

In a longitudinal growth hormone trial, the 12-month height increase may be missing for participants who stop attending visits. If discontinuation is related to unobserved growth, analysing only participants with a recorded 12-month measurement can misrepresent the randomized groups. A complete analysis therefore has two linked tasks: describe who is missing and when, then state how the unobserved outcomes are assumed to differ from predictions based on observed data.

The case below is entirely hypothetical. It uses change in height from baseline to month 12, measured in centimeters, with larger values indicating more growth. The target contrast is the mean 12-month change under assignment to growth hormone minus the mean change under assignment to control, for all randomized participants. This treatment-policy contrast retains participants in their assigned groups regardless of treatment discontinuation. It is not a comparison restricted to those who completed follow-up.

Definition: Let \(Y_{12}\) be 12-month height change, \(A\) denote randomized arm, and \(R_{12}=1\) indicate that \(Y_{12}\) is observed. A pattern-mixture sensitivity analysis specifies the distribution of \(Y_{12}\) separately by observed-data pattern. In a delta-adjusted model, a fitted reference distribution under missing at random (MAR) is shifted for participants with missing outcomes by a stated amount \(\delta_g\) in arm \(g\). Here \(\delta_g\) is measured in centimeters: a negative value assumes less growth than predicted under the reference model.

Hypothetical Trial and Missingness Summary

Suppose 120 children were randomized equally: 60 to growth hormone and 60 to control. Visit records show the following monotone discontinuation patterns. Each listed number is the number of children whose last attended scheduled visit was at the indicated point; those children have no recorded 12-month outcome.

Last attended visit before month 12Growth hormoneControl
Before month 342
Month 3, but not month 643
Month 6, but not month 943
Month 9, but not month 1234
12-month outcome observed4548
Total randomized6060

Thus 15 of 60 growth-hormone participants (25%) and 12 of 60 control participants (20%) lack the endpoint. The timing matters: early withdrawal leaves less observed history with which to predict the missing outcome. The table also shows somewhat more endpoint missingness in the growth-hormone arm, but counts alone do not establish why participants withdrew or whether their unobserved growth differed from predictions.

Worked Example: Calculating Endpoint Availability

Calculate the missing-outcome proportion in each randomized arm and the difference in those proportions.

For growth hormone, the number missing is \(4+4+4+3=15\), so the missing proportion is \(15/60=0.25\), or 25%. For control, it is \(2+3+3+4=12\), giving \(12/60=0.20\), or 20%. The difference, growth hormone minus control, is \(0.25-0.20=0.05\), or 5 percentage points.

These figures describe endpoint availability, not the treatment effect on growth and not evidence that missingness is MNAR. They should be reported by arm and alongside the timing and observed histories of discontinuation.

Reference Model and Delta Adjustment

The reference analysis predicts missing 12-month outcomes using randomized arm, baseline characteristics such as age and baseline height, and the available longitudinal height measurements. A typical implementation uses multiple imputation from a model that includes relevant observed predictors and allows the mean growth trajectory to differ by arm. Under its MAR assumption, after conditioning on the included information, the distribution of the missing outcome is the same as the corresponding predictive distribution for participants with observed outcomes.

MAR cannot be verified from the observed data alone. The delta adjustment makes the departure from that reference assumption explicit. For this illustration, assume a location shift: within arm \(g\), the imputed missing outcomes have the reference predictive distribution shifted by \(\delta_g\), while observed outcomes are not shifted. A negative \(\delta_g\) means that participants missing the endpoint are assumed to have grown less than otherwise similar participants predicted under MAR. The shift is conditional on the observed information used by the reference model; it is not a claim that every missing child has exactly the same growth value.

If the shift is constant within each arm and \(q_g\) is that arm’s missing fraction, its effect on the arm mean is \(q_g\delta_g\). Consequently, for the growth-hormone-minus-control contrast,

$$ \hat{\tau}(\delta_T,\delta_C) = \hat{\tau}_{\mathrm{MAR}}+q_T\delta_T-q_C\delta_C. $$

Here \(T\) denotes growth hormone and \(C\) denotes control. This identity follows by separating each arm’s full mean into its observed and missing portions. If the reference-model mean is \(\hat{\mu}_{g,\mathrm{MAR}}\), shifting only the missing fraction changes it to \((1-q_g)\hat{\mu}_{g,\mathrm{observed}}+q_g(\hat{\mu}_{g,\mathrm{missing,MAR}}+\delta_g)\). Relative to the MAR mean, the change is exactly \(q_g\delta_g\). Subtracting the adjusted control mean from the adjusted growth-hormone mean gives the stated contrast.

With multiple imputation, this adjustment is applied to the imputed values and the treatment contrast is re-estimated in each completed data set. The final standard error and confidence interval should be obtained by pooling the completed-data estimates and their variances using Rubin’s rules. In general, uncertainty should be recalculated for each sensitivity scenario rather than assumed to be identical across scenarios.

Worked Example: Applying the Primary MNAR Assumption

Suppose the reference multiple-imputation analysis gives estimated all-randomized mean changes of 5.90 cm in the growth-hormone arm and 4.70 cm in the control arm. The MAR treatment contrast is therefore \(5.90-4.70=1.20\) cm. For a primary sensitivity assumption, suppose missing growth-hormone outcomes are shifted down by 0.8 cm (\(\delta_T=-0.8\)) and missing control outcomes by 0.2 cm (\(\delta_C=-0.2\)).

The arm-specific missing fractions are \(q_T=15/60=0.25\) and \(q_C=12/60=0.20\). The adjusted contrast is

$$ \hat{\tau}(-0.8,-0.2) = 1.20+(0.25)(-0.8)-(0.20)(-0.2) = 1.20-0.20+0.04 = 1.04\text{ cm}. $$

Equivalently, the adjusted arm means are \(5.90+(0.25)(-0.8)=5.70\) cm and \(4.70+(0.20)(-0.2)=4.66\) cm; their difference is \(5.70-4.66=1.04\) cm. The control-arm shift also lowers its mean, so it offsets some of the reduction in the treatment contrast. Suppose the scenario-specific pooled standard error is 0.39 cm. A large-sample 95% Wald interval is \(1.04\pm1.96(0.39)=1.04\pm0.764\), or approximately 0.28 to 1.80 cm. Under this stated sensitivity model, the estimated mean advantage is 1.04 cm, and the interval remains above zero. This inference is conditional on the model and assumptions; the data do not establish that these delta values are correct.

Varying Assumptions and Assessing Robustness

A single MNAR assumption is not enough to show how dependent the conclusion is on untestable choices. Vary the delta values over a scientifically interpretable range, give particular attention to differential departures between arms, and report the estimate and interval for each scenario. For this illustration, the table gives hypothetical results from refitting and pooling the multiple-imputation analysis at each scenario. Intervals use the large-sample form \(\hat{\tau}\pm1.96SE\); their standard errors are scenario-specific.

Growth-hormone deltaControl deltaEstimated contrast (cm)SE (cm)95% Wald interval (cm)
0.00.01.200.380.46 to 1.94
-0.8-0.21.040.390.28 to 1.80
-1.5-0.20.870.410.06 to 1.67
-2.0-0.20.740.42-0.08 to 1.56

The estimate in the third row follows directly from the shift identity: \(1.20+(0.25)(-1.5)-(0.20)(-0.2)=0.865\) cm, reported as 0.87 cm. Its interval is \(0.865\pm1.96(0.41)=0.865\pm0.804\), approximately 0.06 to 1.67 cm. In the fourth row, the estimate is \(1.20+(0.25)(-2.0)-(0.20)(-0.2)=0.74\) cm; its interval is \(0.74\pm1.96(0.42)\), approximately -0.08 to 1.56 cm.

For the first three scenarios, the 95% intervals exclude zero; in the most adverse scenario shown, the interval includes zero. Thus the positive estimated contrast persists, but the conclusion that the interval excludes zero is not robust to every considered assumption. The values in the table are hypothetical outputs, not a claim that the stated deltas are biologically plausible for any real trial. A real report should justify the range using clinical knowledge, observed growth before withdrawal, and input from investigators or participants.

Worked Example: Finding an Approximate Tipping Point

Hold the control delta at \(-0.2\) cm and use the simple contrast formula to find the growth-hormone delta at which the point estimate reaches zero. This is a point-estimate tipping value, not the value at which a confidence interval first includes zero.

Set \(0=1.20+0.25\delta_T-0.20(-0.2)\). Since \(-0.20(-0.2)=0.04\), this becomes \(0=1.24+0.25\delta_T\), so \(\delta_T=-1.24/0.25=-4.96\) cm. Under the constant-shift calculation, missing growth-hormone outcomes would need to be about 4.96 cm below their MAR predictions, while the control shift remains -0.2 cm, to bring the estimated contrast to zero.

That value is not the threshold for statistical evidence. An interval may include zero while the point estimate remains positive, as the last row of the table demonstrates. Nor does the calculation establish whether a 4.96 cm departure is credible; it identifies the assumption required by this simplified model to change the point estimate to zero.

Diagnostics, Alternatives, and Limitations

Before interpreting a sensitivity analysis, check that the reference model is suitable for the observed data. Inspect growth trajectories and residual patterns by arm, compare observed histories of participants who do and do not later discontinue, and examine whether the imputation model includes predictors of both growth and dropout. Check that the model produces plausible predictive distributions, including plausible ranges and variability, rather than only plausible means. Sparse early-dropout patterns, poor overlap in observed histories, or a small number of participants can make predictions especially dependent on model form.

A delta analysis also needs diagnostics of its own. State whether deltas are common across dropout times or vary by pattern, confirm that the direction and units of each shift are clear, and inspect the implied distributions for implausible values. A constant shift can be too restrictive if early and late discontinuers differ. If substantive knowledge supports different departures by dropout time, pattern-specific deltas can be considered, but the added parameters require more assumptions and should not be chosen solely to obtain a preferred conclusion.

The delta approach is a pattern-mixture sensitivity model: it adjusts the outcome distribution among participants with missing outcomes relative to a chosen reference model. A selection model instead specifies how the probability of observing an outcome depends on its value and observed information. These approaches express MNAR assumptions differently, and observed data generally cannot determine which untestable assumption is right. Copy-reference analysis is another possible sensitivity approach when its treatment-course assumption suits the question; it is not interchangeable with an arm-specific delta shift. The choice should follow the estimand and clinical rationale, not convenience or the direction of the result.

A useful report states the randomized denominators, endpoint availability and timing by arm, the estimand, the reference model, the delta interpretation and units, and the range of sensitivity assumptions. It presents both estimates and uncertainty, and distinguishes a positive point estimate from an interval that excludes zero. Sensitivity analysis does not repair biased randomization, a misspecified outcome model, or missing data that are not adequately represented by the chosen patterns and predictors. It also cannot prove that the treatment effect is robust beyond the assumptions actually examined.

Common pitfall: “The MAR estimate is positive, so treatment works even if outcomes are missing.” This confuses a reference-model result with evidence that its missingness assumption is correct. The correction is to state the MAR assumption, examine clinically relevant departures from it, and describe exactly which conclusions persist across the reported scenarios.

Check Your Understanding

Answer each question using the hypothetical trial above. Solutions follow the questions.

  1. If 18 of 60 participants in an arm lack the endpoint, what is that arm’s missing fraction? What does it describe?
  2. With \(q_T=0.25\), \(q_C=0.20\), \(\hat{\tau}_{\mathrm{MAR}}=1.20\) cm, \(\delta_T=-1.0\) cm, and \(\delta_C=0\), calculate the adjusted contrast.
  3. Why can a positive point estimate still fail to show a confidence interval excluding zero?
  4. What does a delta of \(-0.8\) cm mean in this analysis, and what does it not mean?

Solutions. (1) The missing fraction is \(18/60=0.30\), or 30%. It describes endpoint availability in that randomized arm, not the probability that the treatment is effective or the size of the treatment contrast. (2) The adjusted contrast is \(1.20+(0.25)(-1.0)-(0.20)(0)=0.95\) cm. (3) The interval also depends on the standard error: sufficient uncertainty can make its lower limit zero or less even when the estimate is positive. The point estimate and interval answer different questions. (4) It assumes that missing growth-hormone outcomes are, on the model’s conditional predictive scale, shifted downward by 0.8 cm from their MAR predictions. It does not assert that each missing child grew exactly 0.8 cm less, nor can observed data alone verify that shift.

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